YRC Public Data Repository - Protein Structure Prediction

Protein:	PURA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	431 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PURA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|124120889, gi... - gi\|153803578\|ref\|ZP_01958164.1\| adenylosuccinate synthetase [Vibrio cholerae MZO-3], gi\|124120889\|gb... gi\|153214885, gi... - gi\|153214885\|ref\|ZP_01949683.1\| adenylosuccinate synthetase [Vibrio cholerae 1587], gi\|124115044\|gb\|... gi\|229341262, gi... - gi\|229521668\|ref\|ZP_04411086.1\| adenylosuccinate synthetase [Vibrio cholerae TM 11079-80], gi\|229341... PURA_VIBC3 - Adenylosuccinate synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 ... gi\|229513526, gi... - gi\|229513526\|ref\|ZP_04402990.1\| adenylosuccinate synthetase [Vibrio cholerae TMA 21], gi\|229349403\|g... gi\|229335100, gi... - gi\|229527468\|ref\|ZP_04416860.1\| adenylosuccinate synthetase [Vibrio cholerae 12129(1)], gi\|229335100... gi\|229338163, gi... - gi\|229524582\|ref\|ZP_04413987.1\| adenylosuccinate synthetase [Vibrio cholerae bv. albensis VL426], gi... tr\|D7HFN4\|D7HFN4... - Adenylosuccinate synthetase OS=Vibrio cholerae GN=purA PE=3 SV=1, Adenylosuccinate synthetase OS=Vib... gi\|254292171, gi... - gi\|254292171\|ref\|ZP_04962941.1\| adenylosuccinate synthetase [Vibrio cholerae AM-19226], gi\|197750475... gi\|148873500, gi... - gi\|153831022\|ref\|ZP_01983689.1\| adenylosuccinate synthetase [Vibrio cholerae 623-39], gi\|148873500\|g... gi\|153825123, gi... - gi\|153825123\|ref\|ZP_01977790.1\| adenylosuccinate synthetase [Vibrio cholerae MZO-2], gi\|149741269\|gb...	718.0	[0..1]	[430..1]
PURA_VIBCH - Adenylosuccinate synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)... gi\|254846847, gi... - gi\|75828746\|ref\|ZP_00758091.1\| COG0104: Adenylosuccinate synthase [Vibrio cholerae MO10], gi\|2548511... PURA_VIBCM - Adenylosuccinate synthetase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=purA PE=3 SV=1 gi\|121728998, gi... - gi\|75814700\|ref\|ZP_00745258.1\| COG0104: Adenylosuccinate synthase [Vibrio cholerae V52], gi\|12172899... gi\|229507346, gi... - gi\|229507346\|ref\|ZP_04396851.1\| adenylosuccinate synthetase [Vibrio cholerae BX 330286], gi\|22935485... gi\|229509731, gi... - gi\|229509731\|ref\|ZP_04399212.1\| adenylosuccinate synthetase [Vibrio cholerae B33], gi\|229353205\|gb\|E... gi\|229345918, gi... - gi\|229516855\|ref\|ZP_04406301.1\| adenylosuccinate synthetase [Vibrio cholerae RC9], gi\|229345918\|gb\|E... gi\|229606852, gi... - gi\|229606852\|ref\|YP_002877500.1\| adenylosuccinate synthetase [Vibrio cholerae MJ-1236], gi\|229369507... gi\|124118192, gi... - gi\|153223466\|ref\|ZP_01953889.1\| adenylosuccinate synthetase [Vibrio cholerae MAK 757], gi\|124118192\|... gi\|153820226, gi... - gi\|153820226\|ref\|ZP_01972893.1\| adenylosuccinate synthetase [Vibrio cholerae NCTC 8457], gi\|12650922... PURA_VIBCH - Adenylosuccinate synthetase OS=Vibrio cholerae GN=purA PE=3 SV=3	718.0	[0..1]	[430..1]
gi\|85695156, gi\|... - gi\|85710752\|ref\|ZP_01041813.1\| Adenylosuccinate synthase [Idiomarina baltica OS145], gi\|85695156\|gb\|...	713.0	[0..1]	[430..1]
PURA_IDILO - Adenylosuccinate synthetase OS=Idiomarina loihiensis GN=purA PE=3 SV=1 PURA_IDILO - Adenylosuccinate synthetase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=pu...	711.0	[0..1]	[430..1]
PURA_PSEPG - Adenylosuccinate synthetase OS=Pseudomonas putida (strain GB-1) GN=purA PE=3 SV=1 tr\|I7C9K0\|I7C9K0... - Adenylosuccinate synthetase OS=Pseudomonas putida (strain DOT-T1E) GN=purA PE=3 SV=1 PURA_PSEPK - Adenylosuccinate synthetase OS=Pseudomonas putida (strain KT2440) GN=purA PE=3 SV=1 PURA_PSEP1 - Adenylosuccinate synthetase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=purA PE=3 SV=1 tr\|E4R898\|E4R898... - Adenylosuccinate synthetase OS=Pseudomonas putida (strain BIRD-1) GN=purA PE=3 SV=1	710.0	[0..1]	[430..1]
gi\|95112854 - gi\|95112854\|emb\|CAK17582.1\| adenylosuccinate synthetase [Pseudomonas entomophila L48] PURA_PSEE4 - Adenylosuccinate synthetase OS=Pseudomonas entomophila (strain L48) GN=purA PE=3 SV=1	709.0	[0..1]	[430..1]
gi\|46143460 - gi\|46143460\|ref\|ZP_00135197.2\| COG0104: Adenylosuccinate synthase [Actinobacillus pleuropneumoniae s... PURA_ACTP2 - Adenylosuccinate synthetase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=purA PE=3...	709.0	[0..1]	[430..1]
PURA_ECOUT - Adenylosuccinate synthetase OS=Escherichia coli (strain UTI89 / UPEC) GN=purA PE=3 SV=1 gi\|15834407, gi\|... - gi\|15834407\|ref\|NP_313180.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. Sakai], gi\|1... PURA_ECOL5 - Adenylosuccinate synthetase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=purA PE=3 SV=1 PURA_ECOL6 - Adenylosuccinate synthetase OS=Escherichia coli O6 GN=purA PE=3 SV=2 PURA_SHIDS - Adenylosuccinate synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=purA PE=3 SV=1 PURA_SHIBS - Adenylosuccinate synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=purA PE=3 SV=1 gi\|89110897, gi\|... - gi\|89110897\|ref\|AP_004677.1\| adenylosuccinate synthetase [Escherichia coli str. K-12 substr. W3110],... PURA_ECO24 - Adenylosuccinate synthetase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=purA PE=3 SV=1 PURA_ECOK1 - Adenylosuccinate synthetase OS=Escherichia coli O1:K1 / APEC GN=purA PE=3 SV=1 PURA_ECOHS - Adenylosuccinate synthetase OS=Escherichia coli O9:H4 (strain HS) GN=purA PE=3 SV=1 gi\|124500678, gi... - gi\|124528236\|ref\|ZP_01699560.1\| Adenylosuccinate synthase [Escherichia coli B], gi\|124500678\|gb\|EAY4... gi\|75212274, gi\|... - gi\|75212274\|ref\|ZP_00712314.1\| COG0104: Adenylosuccinate synthase [Escherichia coli B171], gi\|194426... gi\|190904298, gi... - gi\|75231230\|ref\|ZP_00717637.1\| COG0104: Adenylosuccinate synthase [Escherichia coli B7A], gi\|1911656... gi\|192955834, gi... - gi\|75234274\|ref\|ZP_00718662.1\| COG0104: Adenylosuccinate synthase [Escherichia coli E110019], gi\|193... gi\|191170704, gi... - gi\|75242434\|ref\|ZP_00726196.1\| COG0104: Adenylosuccinate synthase [Escherichia coli F11], gi\|7523617... gi\|193066038, gi... - gi\|75255904\|ref\|ZP_00727636.1\| COG0104: Adenylosuccinate synthase [Escherichia coli E22], gi\|1930660... gi\|188493594, gi... - gi\|75515416\|ref\|ZP_00737573.1\| COG0104: Adenylosuccinate synthase [Escherichia coli 53638], gi\|18849... gi\|83585085, gi\|... - gi\|83585085\|ref\|ZP_00923738.1\| COG0104: Adenylosuccinate synthase [Escherichia coli 101-1], gi\|19443... PURA_SHIB3 - Adenylosuccinate synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=purA PE=3... PURA_ECO55 - Adenylosuccinate synthetase OS=Escherichia coli (strain 55989 / EAEC) GN=purA PE=3 SV=1 PURA_ECO81 - Adenylosuccinate synthetase OS=Escherichia coli O81 (strain ED1a) GN=purA PE=3 SV=1 PURA_ECOLU - Adenylosuccinate synthetase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=purA PE=3 SV=... PURA_ECO7I - Adenylosuccinate synthetase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=purA PE=3 SV=1 sp\|B7UQI6\|PURA_ECO27 - Adenylosuccinate synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=purA PE=3 SV=1 EG10790 - adenylosuccinate synthetase / Adenylosuccinate synthase, purine synthesis gi\|168754747, gi... - gi\|189357871\|gb\|EDU76290.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|188014493, gi... - gi\|188014493\|gb\|EDU52615.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|189364050, gi... - gi\|189364050\|gb\|EDU82469.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|168760418, gi... - gi\|189368933\|gb\|EDU87349.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|189001718, gi... - gi\|189001718\|gb\|EDU70704.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|187770332, gi... - gi\|187770332\|gb\|EDU34176.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4196], gi\|1... PURA_ECOLC - Adenylosuccinate synthetase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=purA PE=3 ... PURA_ECO5E - Adenylosuccinate synthetase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=purA PE=3 SV=1 gi\|208819801, gi... - gi\|208819801\|ref\|ZP_03260121.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4042], ... PURA_ECO27 - Adenylosuccinate synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=purA PE=3 SV=1 PURA_ECOSE - Adenylosuccinate synthetase OS=Escherichia coli (strain SE11) GN=purA PE=3 SV=1 PURA_ESCF3 - Adenylosuccinate synthetase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) ... gi\|217320696, gi... - gi\|217324475\|ref\|ZP_03440559.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. TW14588],... gi\|227886780, gi... - gi\|227886780\|ref\|ZP_04004585.1\| adenylosuccinate synthetase [Escherichia coli 83972], gi\|227836353\|g... PURA_ECOLI - Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate ligase) (AdSS) (AMPSase) - Escherichia coli PURA_ECO45 - Adenylosuccinate synthetase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=purA PE=3 SV=1 gi\|226901756, gi... - gi\|237703844\|ref\|ZP_04534325.1\| adenylosuccinate synthetase [Escherichia sp. 3_2_53FAA], gi\|22690175... PURA_ECOL6 - Adenylosuccinate synthetase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purA P... PURA_ECO8A - Adenylosuccinate synthetase OS=Escherichia coli O8 (strain IAI1) GN=purA PE=3 SV=1 PURA_ECOBW - Adenylosuccinate synthetase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=purA PE=3 SV=1 PURA_ECO57 - Adenylosuccinate synthetase OS=Escherichia coli O157:H7 GN=purA PE=3 SV=2 gi\|189376057, gi... - gi\|189376057\|gb\|EDU94473.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|242379699, gi... - gi\|251787426\|ref\|YP_003001730.1\| hypothetical protein B21_04006 [Escherichia coli BL21], gi\|24237969... EG10790 - adenylosuccinate synthetase / Adenylosuccinate synthase, purine synthesis gi\|189374841, gi... - gi\|189374841\|gb\|EDU93257.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|253980163, gi... - gi\|254290856\|ref\|YP_003056604.1\| adenylosuccinate synthetase [Escherichia coli BL21(DE3)], gi\|253980... PURA_ECOSM - Adenylosuccinate synthetase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=purA PE=3 SV=1 gi\|254037191, gi... - gi\|254037191\|ref\|ZP_04871268.1\| adenylosuccinate synthetase [Escherichia sp. 1_1_43], gi\|226840297\|g... PURA_ECODH - Adenylosuccinate synthetase OS=Escherichia coli (strain K12 / DH10B) GN=purA PE=3 SV=1 gi\|253976007, gi... - gi\|254164106\|ref\|YP_003047214.1\| adenylosuccinate synthetase [Escherichia coli B str. REL606], gi\|25... gi\|195935967 - gi\|195935967\|ref\|ZP_03081349.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4024] gi\|254796196, gi... - gi\|254796196\|ref\|YP_003081033.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. TW14359]... gi\|194417174, gi... - gi\|194434589\|ref\|ZP_03066846.1\| adenylosuccinate synthetase [Shigella dysenteriae 1012], gi\|19441717... gi\|208734634, gi... - gi\|208813357\|ref\|ZP_03254686.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4045], ... gi\|208809439, gi... - gi\|208809439\|ref\|ZP_03251776.1\| adenylosuccinate synthetase [Escherichia coli O157:H7 str. EC4206], ...	707.0	[0..1]	[431..1]
PURA_SHISS - Adenylosuccinate synthetase OS=Shigella sonnei (strain Ss046) GN=purA PE=3 SV=1	707.0	[0..1]	[431..1]
gi\|194538858, gi... - gi\|75855422\|ref\|ZP_00763073.1\| COG0104: Adenylosuccinate synthase [Vibrio sp. Ex25], gi\|254230079\|re...	707.0	[0..1]	[430..1]

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Predicted Domain #1

Region A:
Residues: [1-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNVVVLGT QWGDEGKGKI VDLLTEQAKY VVRYQGGHNA GHTLVINGDK TVLHLIPSGI  60
   61 LRDNVKCIIG NGVVLAPDAL MKEINMLKER GIPVEERLLI SEACPLILPF HSALDIAREK 120
  121 ARGNKAIGTT GRGIGPAYED KISRRGLRVG DLFNAELFAE KLKEVMAYHN FMLTEYYKVD 180
  181 AVDYEQTLSD ALALADYLKS MCVDVTELLD NARKAGEPIL FEGAQGTLLD IDHGTYPFVT 240
  241 SSNTTAGGVA TGSGFGPRHL DYVLGIMKAY TTRVGAGPFP TELLCEVGDH LGTKGHEFGA 300
  301 TTGRKRRPGW LDAVAMRRAV QINSVSGFCL TKLDVLDGLK EVKICVGYQH PDGTISKVTP 360
  361 LAAEGYEQVT PVYETMPGWS ESTFGATFLE QLPQAAINYI KRIEELLETP IDIISTGPDR 420
  421 NETMILVSPF N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1kjxA
Description:	Adenylosuccinate synthetase, PurA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleobase, nucleoside, nucleotide kinase activity	3.66392587433723	bayes_pls_golite062009
binding	2.64537357529343	bayes_pls_golite062009
nucleotide kinase activity	2.24094813695083	bayes_pls_golite062009
nucleic acid binding	2.11222585187695	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	1.96697952975573	bayes_pls_golite062009
DNA binding	1.7904783386531	bayes_pls_golite062009
transcription regulator activity	1.68903321260301	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	1.24165037431695	bayes_pls_golite062009
purine ribonucleotide binding	1.1110976601505	bayes_pls_golite062009
ribonucleotide binding	1.11103644113672	bayes_pls_golite062009
purine nucleotide binding	1.1086792521709	bayes_pls_golite062009
nucleotide binding	1.1060655022247	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
ATP binding	0.80197288940364	bayes_pls_golite062009
adenyl ribonucleotide binding	0.770085840885632	bayes_pls_golite062009
adenyl nucleotide binding	0.751575230566049	bayes_pls_golite062009
transcription factor activity	0.603758349693077	bayes_pls_golite062009
adenylate kinase activity	0.447752711852745	bayes_pls_golite062009
kinase activity	0.431162005044036	bayes_pls_golite062009
structural constituent of ribosome	0.396187998943318	bayes_pls_golite062009
translation regulator activity	0.29096092258568	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.277694966071518	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.274994961137851	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.250756824614616	bayes_pls_golite062009
protein binding	0.170837278876362	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.126821629333317	bayes_pls_golite062009
helicase activity	0.0775311459068899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: