YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375351, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375351, gi|....

Description	E-value	Query Range	Subject Range
gi\|90422226, gi\|... - gi\|90422226\|ref\|YP_530596.1\| ModE family transcriptional regulator [Rhodopseudomonas palustris BisB1...	133.0	[0..1]	[258..1]
gi\|71907109, gi\|... - gi\|71907109\|ref\|YP_284696.1\| molybdenum-binding protein, N-terminal:molybdenum-pterin binding protei...	131.0	[0..2]	[255..7]
gi\|33151874, gi\|... - gi\|33151874\|ref\|NP_873227.1\| DNA-binding transcriptional regulator OxyR [Haemophilus ducreyi 35000HP...	131.0	[0..17]	[257..1]
gi\|116253171, gi... - gi\|116253171\|ref\|YP_769009.1\| LysR family transcriptional regulator [Rhizobium leguminosarum bv. vic...	131.0	[0..11]	[210..2]
gi\|77742039, gi\|... - gi\|77742039\|ref\|ZP_00810519.1\| Molybdenum-binding protein, N-terminal:Molybdenum-pterin binding prot...	130.0	[0..1]	[258..1]
gi\|84386490, gi\|... - gi\|84386490\|ref\|ZP_00989517.1\| transcriptional regulator, LysR family [Vibrio splendidus 12B01], gi\|...	130.0	[0..17]	[219..1]
gi\|226945151, gi... - gi\|67154398\|ref\|ZP_00416143.1\| regulatory protein, LysR:LysR substrate binding domain [Azotobacter v... gi\|67154398 - gi\|67154398\|ref\|ZP_00416143.1\| regulatory protein, LysR:LysR substrate binding domain [Azotobacter v...	130.0	[0..17]	[244..1]
RBCR_SYNY3 - Probable RuBisCO transcriptional regulator OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rbcR P... gi\|7446759 - pir\|\|S75235 hypothetical protein - Synechocystis sp. (strain PCC 6803) RBCR_SYNY3 - Probable RuBisCO transcriptional regulator OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)...	129.0	[0..16]	[232..5]
gi\|110166717, gi... - gi\|71674406\|ref\|ZP_00672153.1\| regulatory protein, LysR:LysR, substrate-binding [Trichodesmium eryth...	129.0	[0..16]	[230..5]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLHALLTLS LGDKPFANPR RIALLRQVAN TGSISQGAKL AGISYKAAWD AINEMNTTMP  60
   61 EAVVTSEKGG KGGGGAKLTE FGERLLKVYS ITSQVQDMAL TALLDDSVDM HSLLDVMAHF 120
  121 SLKTSARNQL TGRIHSIEPL GLNDSLKVTL AGGQLIQISV THASYERLQL ALNQSILLLF 180
  181 KAPAVIASRD ACERTGQNCV SGHLLSVTEL AYKAELAIDI GGKDVIYSVM PLADIQTLVL 240
  241 GQPCFACFDA TQVIVASMN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.154902
Match:	1b9mA
Description:	N-terminal domain of molybdate-dependent transcriptional regulator ModE; C-terminal domain of molybdate-dependent transcriptional regulator ModE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
molybdenum ion binding	2.306486700841	bayes_pls_golite062009
transcription regulator activity	1.3574186068153	bayes_pls_golite062009
nucleic acid binding	1.03033432349652	bayes_pls_golite062009
DNA binding	0.926753986189559	bayes_pls_golite062009
binding	0.731921702708422	bayes_pls_golite062009
transcription factor activity	0.638085164477305	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
transporter activity	0.437297481147526	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: