YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349541, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349541, gi|....

Description	E-value	Query Range	Subject Range
ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1 ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JA...	250.0	[0..5]	[335..49]
gi\|20806788 - gi\|20806788\|ref\|NP_621959.1\| Threonine aldolase [Thermoanaerobacter tengcongensis MB4] gi\|20515250, gi\|... - gi\|20806788\|ref\|NP_621959.1\| threonine aldolase [Thermoanaerobacter tengcongensis MB4], gi\|20515250\|...	244.0	[0..2]	[336..4]
gi\|149905426, gi... - gi\|82744592\|ref\|ZP_00907107.1\| aspartate aminotransferase [Clostridium beijerincki NCIMB 8052], gi\|8...	243.0	[0..1]	[335..32]
gi\|221138841 - gi\|221138841\|ref\|ZP_03563643.1\| ornithine aminotransferase [Staphylococcus aureus subsp. aureus str.... OAT1_STAAR - Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain MRSA252) GN=rocD1 PE=3 SV=1 gi\|227556298, gi... - gi\|227556298\|ref\|ZP_03986345.1\| ornithine aminotransferase [Staphylococcus aureus subsp. aureus MN8]... gi\|221140729 - gi\|221140729\|ref\|ZP_03565222.1\| ornithine aminotransferase [Staphylococcus aureus subsp. aureus str.... gi\|227853301, gi... - gi\|227898333\|ref\|ZP_04016138.1\| ornithine aminotransferase [Staphylococcus aureus subsp. aureus TCH6...	243.0	[0..4]	[336..46]
gi\|18309693, gi\|... - gi\|18309693\|ref\|NP_561627.1\| aspartate aminotransferase [Clostridium perfringens str. 13], gi\|181443...	242.0	[0..1]	[336..32]
gi\|169297456, gi... - gi\|169344536\|ref\|ZP_02865505.1\| aminotransferase, class I/II [Clostridium perfringens C str. JGS1495... gi\|110683677, gi... - gi\|110803176\|ref\|YP_698027.1\| aspartate aminotransferase [Clostridium perfringens SM101], gi\|1106836...	242.0	[0..1]	[336..32]
gi\|168217160, gi... - gi\|182380722\|gb\|EDT78201.1\| aminotransferase, class I/II [Clostridium perfringens NCTC 8239], gi\|168... gi\|110674249, gi... - gi\|110799602\|ref\|YP_695159.1\| aspartate aminotransferase [Clostridium perfringens ATCC 13124], gi\|11...	242.0	[0..1]	[336..32]
gi\|196253921, gi... - gi\|196253921\|ref\|ZP_03152522.1\| aminotransferase class I and II [Clostridium thermocellum DSM 4150],... gi\|67849411, gi\|... - gi\|67916633\|ref\|ZP_00510335.1\| Aminotransferase, class I and II [Clostridium thermocellum ATCC 27405...	242.0	[0..1]	[335..32]
OAT1_STAAS - Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain MSSA476) GN=rocD1 PE=3 SV=1 OAT1_STAAW - Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain MW2) GN=rocD1 PE=3 SV=1 gi\|88193962, gi\|... - gi\|88193962\|ref\|YP_498749.1\| ornithine aminotransferase [Staphylococcus aureus subsp. aureus NCTC 83... OAT1_STAAC - Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain COL) GN=rocD1 PE=3 SV=1 gi\|87160787, gi\|... - gi\|87160787\|ref\|YP_492901.1\| ornithine aminotransferase [Staphylococcus aureus subsp. aureus USA300_... gi\|87160787\|ref\|... - ornithine--oxo-acid transaminase [Staphylococcus aureus subsp. aureus USA300], ornithine--oxo-acid t...	242.0	[0..4]	[336..46]

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Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDLRSDTVT QPTEAMRLAM SRAEVGDDVY GDDPTVNSLQ DMAAEMFGFE SALFTASGTQ  60
   61 ANLLALMAHC ERGDEYLCGQ QAHNYKFEGG GAAVLGSIQP QPLTNQLDGT IALTDVEAAI 120
  121 KPDDIHFART RLLSLENTIG GKVLSQAYLA NAQALAFQRG LKIHLDGARV ANAAVAQGIA 180
  181 IADIAAHFDS VSICLSKGLC APVGSLLLGD ERLIKKATRW RKMLGGGMRQ AGILAAAGKL 240
  241 ALTEQVERLA EDHENAAYLA QQLSQLDEFD IDLASVQTNM VFATLASHVD EQALVKRCRG 300
  301 EGILISPGRT LRFVTHKDVS RQDIDKVLQV FKLHLQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	2fm1A
Description:	Crystal structure of L-ALLO-threonine aldolase (tm1744) from Thermotoga maritima at 2.25 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glycine dehydrogenase (decarboxylating) activity	2.63753310919108	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	2.63753310919108	bayes_pls_golite062009
transferase activity	2.59075614411581	bayes_pls_golite062009
threonine aldolase activity	2.36742457876142	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	1.87460342369605	bayes_pls_golite062009
transcription regulator activity	1.67701710033155	bayes_pls_golite062009
DNA binding	1.4774443071095	bayes_pls_golite062009
nucleic acid binding	1.39741122443159	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
transcription factor activity	1.15775909410582	bayes_pls_golite062009
binding	1.09053123792737	bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity	0.994935084630764	bayes_pls_golite062009
methyltransferase activity	0.681623261233707	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.60304280865376	bayes_pls_golite062009
glycine C-acetyltransferase activity	0.367632398200112	bayes_pls_golite062009
structural molecule activity	0.347975812448725	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.271623203801431	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
L-allo-threonine aldolase activity	0.140152839681041	bayes_pls_golite062009
carbon-carbon lyase activity	0.11598778799668	bayes_pls_golite062009
4-aminobutyrate transaminase activity	0.0779403509221881	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: