YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374586, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	504 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374586, gi|....

Description	E-value	Query Range	Subject Range
gi\|124548900, gi... - gi\|124548900\|ref\|ZP_01707368.1\| amidophosphoribosyltransferase [Shewanella putrefaciens 200], gi\|124... gi\|120598389, gi... - gi\|82744304\|ref\|ZP_00906878.1\| Amidophosphoribosyl transferase [Shewanella sp. W3-18-1], gi\|82718337... gi\|77815343, gi\|... - gi\|77815343\|ref\|ZP_00814579.1\| Amidophosphoribosyl transferase [Shewanella putrefaciens CN-32], gi\|7...	458.0	[0..1]	[504..1]
gi\|151365889, gi... - gi\|153001271\|ref\|YP_001366952.1\| amidophosphoribosyltransferase [Shewanella baltica OS185], gi\|15136... gi\|113950971, gi... - gi\|160875942\|ref\|YP_001555258.1\| amidophosphoribosyltransferase [Shewanella baltica OS195], gi\|16086... gi\|149117090, gi... - gi\|217972798\|ref\|YP_002357549.1\| amidophosphoribosyltransferase [Shewanella baltica OS223], gi\|21749...	457.0	[0..1]	[504..1]
gi\|68547940, gi\|... - gi\|68547940\|ref\|ZP_00587463.1\| Amidophosphoribosyl transferase [Shewanella amazonensis SB2B], gi\|685...	456.0	[0..1]	[504..1]
gi\|68540763, gi\|... - gi\|68540763\|ref\|ZP_00580513.1\| Amidophosphoribosyl transferase [Shewanella baltica OS155], gi\|685216...	456.0	[0..1]	[504..1]
gi\|78367182, gi\|... - gi\|78367182\|ref\|ZP_00837455.1\| Amidophosphoribosyl transferase [Shewanella sp. PV-4], gi\|78360805\|gb...	454.0	[0..1]	[504..1]
gi\|117919931, gi... - gi\|78686911\|ref\|ZP_00851671.1\| Amidophosphoribosyl transferase [Shewanella sp. ANA-3], gi\|78505309\|g...	454.0	[0..1]	[504..1]
gi\|78509976, gi\|... - gi\|78690652\|ref\|ZP_00855294.1\| Amidophosphoribosyl transferase [Shewanella sp. MR-7], gi\|78509976\|gb... gi\|82496524, gi\|... - gi\|82496524\|ref\|ZP_00882091.1\| Amidophosphoribosyl transferase [Shewanella sp. MR-4], gi\|82405479\|gb...	453.0	[0..1]	[504..1]
gi\|69166642, gi\|... - gi\|69949418\|ref\|ZP_00637415.1\| Amidophosphoribosyl transferase [Shewanella frigidimarina NCIMB 400],...	448.0	[0..1]	[504..1]
gi\|91714849, gi\|... - gi\|91792847\|ref\|YP_562498.1\| amidophosphoribosyltransferase [Shewanella denitrificans OS217], gi\|917...	446.0	[0..1]	[504..1]
gi\|90579287, gi\|... - gi\|90579287\|ref\|ZP_01235097.1\| amidophosphoribosyltransferase [Vibrio angustum S14], gi\|90440120\|gb\|...	436.0	[0..1]	[500..1]

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Predicted Domain #1

Region A:
Residues: [1-504]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGIVGIVGQ SSVNQTIYDA LTVLQHRGQD AAGIVTVDRG AFRLRKANGL VKDVFEVKHM  60
   61 QRLQGNAGIG HVRYPTAGSS SASEAQPFYV NSPFGISLAH NGNLTNTLEL AEGLIKKRRH 120
  121 VNTTSDSEVL LNLLADELQK TTSLDLTADE VFDTIAKVHE QARGAYAVVA MIIGQGLVAF 180
  181 RDPFGIRPLV LGKHETPTGT EYMVASESVA LDAVGFEVMR DVAPGEAIYI SLDGNLYTRQ 240
  241 CAKEPSYSPC IFEFVYFARP DSTIDNVSVY ASRVNMGAKL GEKIKKEWYD HDIDVVIPIP 300
  301 ETSCDIALEI ARCMDLPYRQ GFVKNRYIGR TFIMPGQQER KKSVRRKLNA INTEFKGKNV 360
  361 LLVDDSIVRG TTSEQIIEMA REAGAKKVYF ASAAPEIRFP NVYGIDMPTS NELIAHGRDA 420
  421 DEIAKLIGAD GIIFQNLPDL IEAVRMENPE IKRFETSVFD GHYITNDVDQ SYLDHLTQLR 480
  481 NDDAKADRNK DIGTNLELHN VCHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	1ecbA
Description:	Glutamine PRPP amidotransferase, C-terminal domain; Glutamine PRPP amidotransferase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
uracil phosphoribosyltransferase activity	2.36237864658341	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.51875493459374	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	0.985266832225609	bayes_pls_golite062009
diphosphotransferase activity	0.749909396904601	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	0.625087274084001	bayes_pls_golite062009
nucleic acid binding	0.283725923623827	bayes_pls_golite062009
ligase activity	0.204093345072151	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.148898393751978	bayes_pls_golite062009
endopeptidase activity	0.0940838340168359	bayes_pls_golite062009
peptidase activity	0.0898497842822991	bayes_pls_golite062009
transcription regulator activity	0.057753538747651	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.012663147802059	bayes_pls_golite062009
protein binding	0.00621436730716318	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: