| Protein: | gi|24348999, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 1145 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348999, gi|....
| Description | E-value | Query Range |
Subject Range |
|
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303.0 | [0..1] | [1144..99] |
|
|
301.0 | [0..1] | [1145..52] |
|
|
292.0 | [0..1] | [1145..45] |
|
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289.0 | [0..1] | [1144..68] |
|
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288.0 | [0..1] | [1145..1] |
|
|
283.0 | [0..1] | [1144..27] |
|
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282.0 | [0..1] | [1145..1] |
|
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282.0 | [0..1] | [1135..41] |
|
|
281.0 | [0..1] | [1145..1] |
|
|
281.0 | [0..1] | [1145..1] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MRLKQIKLAG FKSFVDPTKI PFLQALSAII GPNGCGKSNV IDAVRWVLGE SSAKHLRGDS 60
61 MSDVIFNGSS ARKPVSVAGV ELVFENKEGR LAGQYASYEE ISVKRQVSRD GESWYFLNGQ 120
121 KCRRKDITDL FMGTGLGPRS YAIIEQGTIS RLIESKPQDL RTFIEEAAGI SRYKERRRET 180
181 ESRIRHTREN LERLGDIRSE LGKQLDKLSQ
|
| Detection Method: |  |
| Confidence: | 41.0 |
| Match: | 1xewX |
| Description: | Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15787013909653 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.943998953818793 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.907608979758986 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.897070212509257 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.89647392916834 | bayes_pls_golite062009 |
| catalytic activity | 0.828877635849693 | bayes_pls_golite062009 |
| hydrolase activity | 0.508561262015031 | bayes_pls_golite062009 |
|
Region A: Residues: [211-412] |
1 11 21 31 41 51
| | | | | |
1 QAKAATQYRE LKQAERKTHA ELLVMRFQEL QSQMASLSEQ INSLELQQAA AQSLAQTSEL 60
61 ESTELQVKLS QLAEQEQHAV EAYYLTGTEI AKLEQQLQSQ KQRDAQLHTQ LEQLSEQLTQ 120
121 NKAKLDTYQA SFHALEAELG QLAPQHELQQ EMMDELQAQW EMSVSRSEAQ TEVARTQASA 180
181 VAQHKLQLEL HRSKLVHQQQ LN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [413-611] |
1 11 21 31 41 51
| | | | | |
1 AHKTQLHQEQ QQELSSLTEH ALEDTSASLS QEIELLEQVI TQQIEVNQEL ELALVENTQA 60
61 LDLARGEFEQ LSQRLTSMRA RFELVEQWLA KQEELSDKPQ LWQSIQVENG WEAAAELALQ 120
121 GLMTLPVGVS ANELGFYTDA RCLEKIDDHI EGSPIKLPAD VNLAPWLNGL KWADNLASAQ 180
181 AQLASLAADE RIVTADGYL
|
| Detection Method: | |
| Confidence: | 2.1 |
| Match: | 1gxlA |
| Description: | Smc hinge domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.43109245051363 | bayes_pls_golite062009 |
| protein binding | 0.515875397106509 | bayes_pls_golite062009 |
| catalytic activity | 0.0931560765254921 | bayes_pls_golite062009 |
|
Region A: Residues: [612-974] |
1 11 21 31 41 51
| | | | | |
1 LGKGFLIAKQ DNSQSLVQLS KEQTQLSEAI AECVQARAIQ QSKLDELSQQ LIQVRDSVNQ 60
61 GTQRLHQLQL DKATKSTQLN NAEALAKQRE AKRGQLEDTV ARTHAELAEL AGQLMLLAEQ 120
121 EDELADALAQ SIDKQQQQSQ DAQGDLARHQ ALKAQISDTQ RRLSTLNASL QSVTTRMAVS 180
181 TEQIELQRVR VNELVQSRET LSAQLASVAE LHGDQQTAKL SEQLALLLNQ QQSQQQALKA 240
241 LRTQQSSLTE TLNSIGLKQK QELGKLEGLT QSLSTLKLRR EGLKGQADSQ LAALSEQQIV 300
301 LAQIIDSLPS DGQPDKWQRD LDQIRQKIIR LGAINLAAIE EFEQQSERKS YLDHQDEDLN 360
361 KGL
|
| Detection Method: | |
| Confidence: | 2.01 |
| Match: | 2bsgA |
| Description: | The modeled structure of fibritin (gpwac) of bacteriophage T4 based on cryo-EM reconstruction of the extended tail of bacteriophage T4 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [975-1145] |
1 11 21 31 41 51
| | | | | |
1 ATLEEAIRKI DKETRTRFKA TFDAVNEDLG RLFPKVFGGG RAYLALTEDD LLETGVTIMA 60
61 QPPGKKNSTI HLLSGGEKAL TALSLVFAIF RLNPAPFCML DEVDAPLDDA NVERFCRLLK 120
121 EMSQSVQFIY ISHNKITMEM ADQLIGVTMH EPGVSRIVAV DLEQAVAMAD A
|
| Detection Method: | |
| Confidence: | 18.69897 |
| Match: | 1xewY |
| Description: | Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases. |
| Matching Structure (courtesy of the PDB): |
|
