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Protein Overview: gi|24348999, gi|...

General Information:
Name(s) found: gi|24374427 [NCBI NR]
gi|24348999 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374427|ref|NP_718470.1| SMC family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348999|gb|AAN55914.1|AE015728_3 SMC family protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1145 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: chromosome condensation [ISS]
    chromosome segregation [ISS]
    Molecular Function: ATP binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLKQIKLAG FKSFVDPTKI PFLQALSAII GPNGCGKSNV IDAVRWVLGE SSAKHLRGDS  60
   61 MSDVIFNGSS ARKPVSVAGV ELVFENKEGR LAGQYASYEE ISVKRQVSRD GESWYFLNGQ 120
  121 KCRRKDITDL FMGTGLGPRS YAIIEQGTIS RLIESKPQDL RTFIEEAAGI SRYKERRRET 180
  181 ESRIRHTREN LERLGDIRSE LGKQLDKLSQ QAKAATQYRE LKQAERKTHA ELLVMRFQEL 240
  241 QSQMASLSEQ INSLELQQAA AQSLAQTSEL ESTELQVKLS QLAEQEQHAV EAYYLTGTEI 300
  301 AKLEQQLQSQ KQRDAQLHTQ LEQLSEQLTQ NKAKLDTYQA SFHALEAELG QLAPQHELQQ 360
  361 EMMDELQAQW EMSVSRSEAQ TEVARTQASA VAQHKLQLEL HRSKLVHQQQ LNAHKTQLHQ 420
  421 EQQQELSSLT EHALEDTSAS LSQEIELLEQ VITQQIEVNQ ELELALVENT QALDLARGEF 480
  481 EQLSQRLTSM RARFELVEQW LAKQEELSDK PQLWQSIQVE NGWEAAAELA LQGLMTLPVG 540
  541 VSANELGFYT DARCLEKIDD HIEGSPIKLP ADVNLAPWLN GLKWADNLAS AQAQLASLAA 600
  601 DERIVTADGY LLGKGFLIAK QDNSQSLVQL SKEQTQLSEA IAECVQARAI QQSKLDELSQ 660
  661 QLIQVRDSVN QGTQRLHQLQ LDKATKSTQL NNAEALAKQR EAKRGQLEDT VARTHAELAE 720
  721 LAGQLMLLAE QEDELADALA QSIDKQQQQS QDAQGDLARH QALKAQISDT QRRLSTLNAS 780
  781 LQSVTTRMAV STEQIELQRV RVNELVQSRE TLSAQLASVA ELHGDQQTAK LSEQLALLLN 840
  841 QQQSQQQALK ALRTQQSSLT ETLNSIGLKQ KQELGKLEGL TQSLSTLKLR REGLKGQADS 900
  901 QLAALSEQQI VLAQIIDSLP SDGQPDKWQR DLDQIRQKII RLGAINLAAI EEFEQQSERK 960
  961 SYLDHQDEDL NKGLATLEEA IRKIDKETRT RFKATFDAVN EDLGRLFPKV FGGGRAYLAL1020
 1021 TEDDLLETGV TIMAQPPGKK NSTIHLLSGG EKALTALSLV FAIFRLNPAP FCMLDEVDAP1080
 1081 LDDANVERFC RLLKEMSQSV QFIYISHNKI TMEMADQLIG VTMHEPGVSR IVAVDLEQAV1140
 1141 AMADA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] PSI-BLAST 41.0 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.
    2 View Details [211..412] deduced N/A No confident structure predictions are available.
    3 View Details [413..611] FFAS03 2.1 Smc hinge domain
    4 View Details [612..974] FFAS03 2.01 The modeled structure of fibritin (gpwac) of bacteriophage T4 based on cryo-EM reconstruction of the extended tail of bacteriophage T4
    5 View Details [975..1145] PSI-BLAST 18.69897 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.15787013909653 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.943998953818793 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.907608979758986 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.897070212509257 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.89647392916834 bayes_pls_golite062009
  • catalytic activity
    		•  0.828877635849693 bayes_pls_golite062009
  • hydrolase activity
    		•  0.508561262015031 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.43109245051363 bayes_pls_golite062009
  • protein binding
    		•  0.515875397106509 bayes_pls_golite062009
  • catalytic activity
    		•  0.0931560765254921 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle