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View Structure Prediction Details

Protein: gi|24348849, gi|...
Organism: Shewanella oneidensis MR-1
Length: 554 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348849, gi|....

Description E-value Query
Range
Subject
Range
ASNS_TRIVS - Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3
577.0 [0..1] [554..1]
gi|6049843 - gi|6049843|gb|AAF02776.1|AF190729_1 asparagine synthetase [Helianthus annuus]
572.0 [0..1] [554..1]
gi|3132675 - gi|3132675|gb|AAC16325.1| asparagine synthetase [Elaeagnus umbellata]
570.0 [0..1] [554..1]
ASNS1_ARATH - Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Arabidopsis thaliana GN=ASN1 PE=2 SV=2
569.0 [0..1] [554..1]
gi|1617002 - gi|1617002|emb|CAA67889.1| asparagine synthetase [Asparagus officinalis]
568.0 [0..1] [554..1]
gi|22208544 - gi|22208544|gb|AAM94340.1| asparagine synthetase [Striga hermonthica]
567.0 [0..1] [554..1]
gi|218197933 - gi|218197933|gb|EEC80360.1| hypothetical protein OsI_22459 [Oryza sativa Indica Group]
ASNS_ORYSA - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine-dependent asparagine synthetas...
ASNS2_ORYSJ - Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2...
565.0 [0..1] [554..1]
gi|49203338 - gi|49203338|emb|CAD43058.1| putative asparagine synthetase [Pinus sylvestris]
564.0 [0..1] [554..1]

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Predicted Domain #1
Region A:
Residues: [1-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSIFSILDI QSDAKELRQV ALEMSKLMRH RGPDWSGIYA SDKAILAHER LAIVDIEHGA  60
   61 QPLLTEDGSL ILAVNGEIYN HKELKAQLGD KYSYQTNSDC EVILALYQEY GTEFLDKLNG 120
  121 IFAFVLYDKA KDAYLIGRDH MGIIPLYTGR DAAGNLYVAS EMKALMPVCK TVEEFQPGQY 180
  181 LYSSDAAAVK YYTRDWQQYD AVKDNGASQE ELREALEAAV KRQLMSDVPY GVLLSGGLDS 240
  241 SVISAITQTF AKRRIEDDGE TGAWWPQLHS FAVGLKGAPD LIAAKKVADA IGTIHHEINF 300
  301 TFQEGLDAIK EVIYHLETYD VTTIRAATPM YLMARKIKAM GIKMVLSGEG ADELFGGYLY 360
  361 FHKAPNAQAF HEELVRKLDK LHLFDCLRAN KAMAAWGLEA RVPFLDKEFM DVAMRINPEA 420
  421 KMSKDGRIEK HILRQAFEHK LPKEVAWRQK EQFSDGVGYS WIDGLKAHAA EQVDDLQLAN 480
  481 AKFRFPYNTP ETKEAYFYRC FFEEHYPLPS AAETVPGGKS VACSTPEALA WDESLRGIID 540
  541 PSGRAVRSVH AASY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 154.0
Match: 1ct9A
Description: Asparagine synthetase B, C-terminal domain; Asparagine synthetase B, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
asparagine synthase (glutamine-hydrolyzing) activity 3.86770527955716 bayes_pls_golite062009
asparaginase activity 2.94567124791739 bayes_pls_golite062009
peptidase activity 1.76298553502805 bayes_pls_golite062009
DNA binding 1.66643360311025 bayes_pls_golite062009
nucleic acid binding 1.65897778831304 bayes_pls_golite062009
endopeptidase activity 1.58381740825719 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 1.56290563467621 bayes_pls_golite062009
acid-ammonia (or amide) ligase activity 1.41109692769794 bayes_pls_golite062009
N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity 1.2528157874993 bayes_pls_golite062009
catalytic activity 1.19663085909195 bayes_pls_golite062009
binding 1.18139971903068 bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor 1.17174228126736 bayes_pls_golite062009
hydrolase activity 1.05106912722792 bayes_pls_golite062009
protein binding 1.03373728327879 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle