YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348745, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348745, gi|....

Description	E-value	Query Range	Subject Range
gi\|6900377, gi\|1... - gi\|6900377\|emb\|CAB71989.1\| hypothetical protein [Neisseria meningitidis], pir\|\|B81811 conserved hypo... gi\|15794735, gi\|... - gi\|7380484\|emb\|CAB85070.1\| conserved hypothetical protein [Neisseria meningitidis Z2491], gi\|2187686...	495.0	[0..1]	[297..1]
gi\|57904725 - gi\|57904725\|gb\|AAW58970.1\| major head subunit [Cloning vector MuNXKan] CAPSD_BPMU - Major capsid protein OS=Enterobacteria phage Mu GN=T PE=1 SV=1	492.0	[0..1]	[297..1]
gi\|188490769, gi... - gi\|75513089\|ref\|ZP_00735551.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli 53... gi\|194430091, gi... - gi\|75208650\|ref\|ZP_00708954.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli B1...	491.0	[0..1]	[297..1]
gi\|25357758 - pir\|\|F91250 probable major head subunit [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|217324925, gi... - gi\|217324925\|ref\|ZP_03441009.1\| major head subunit [Escherichia coli O157:H7 str. TW14588], gi\|21732... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7], gi\|13364450\|dbj... gi\|189368019, gi... - gi\|189368019\|gb\|EDU86435.1\| major head subunit [Escherichia coli O157:H7 str. EC4501], gi\|168761518\|... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7 str. Sakai], gi\|1...	472.0	[0..3]	[297..5]
gi\|46581115, gi\|... - gi\|46581115\|ref\|YP_011923.1\| major head subunit, putative [Desulfovibrio vulgaris subsp. vulgaris st...	469.0	[0..2]	[297..3]
gi\|134138568, gi... - gi\|67545318\|ref\|ZP_00423241.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	468.0	[0..1]	[297..1]
VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 /... VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae GN=HI_1505 PE=4 SV=1	463.0	[0..3]	[297..4]
gi\|33147606, gi\|... - gi\|33151386\|ref\|NP_872739.1\| hypothetical protein HD0132 [Haemophilus ducreyi 35000HP], gi\|33147606\|...	462.0	[0..3]	[297..4]
gi\|24346191, gi\|... - gi\|24372266\|ref\|NP_716308.1\| prophage MuSo1, major head subunit, putative [Shewanella oneidensis MR-... SO0675 - prophage MuSo1 major head subunit, putative	459.0	[0..2]	[297..3]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEAQVLEA LQATMSAAYT RGLSAAKPQW NMIATEVPSA GAANFYGWLK DLPGIVEWTG  60
   61 ARQLANLGKH GYSIENKTFE SSISISRDNV DDDQIGQYSV IAQNYGDQVA YFPDTLAYPL 120
  121 LKAGFTTLCY DGQNFFDTDH PLATTPATTF SNVIGDPATD T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEPWFLIDDT KVLKPIVFQN RRPFVFKNMN PNEEYTWFNN KYAAGVDGRC NVGFS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [217-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPQLAIGSKA ALTEANYAAA KKLLLKMKKV DGTPIGTRAT KLVVGPDNEA AAKKLISRML  60
   61 IEGGDTNIYY NDVEIVVSPL VTA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.940	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits