YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348745, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348745, gi|....

Description	E-value	Query Range	Subject Range
gi\|6900377, gi\|1... - gi\|6900377\|emb\|CAB71989.1\| hypothetical protein [Neisseria meningitidis], pir\|\|B81811 conserved hypo... gi\|15794735, gi\|... - gi\|7380484\|emb\|CAB85070.1\| conserved hypothetical protein [Neisseria meningitidis Z2491], gi\|2187686...	495.0	[0..1]	[297..1]
gi\|57904725 - gi\|57904725\|gb\|AAW58970.1\| major head subunit [Cloning vector MuNXKan] CAPSD_BPMU - Major capsid protein OS=Enterobacteria phage Mu GN=T PE=1 SV=1	492.0	[0..1]	[297..1]
gi\|188490769, gi... - gi\|75513089\|ref\|ZP_00735551.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli 53... gi\|194430091, gi... - gi\|75208650\|ref\|ZP_00708954.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli B1...	491.0	[0..1]	[297..1]
gi\|25357758 - pir\|\|F91250 probable major head subunit [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|217324925, gi... - gi\|217324925\|ref\|ZP_03441009.1\| major head subunit [Escherichia coli O157:H7 str. TW14588], gi\|21732... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7], gi\|13364450\|dbj... gi\|189368019, gi... - gi\|189368019\|gb\|EDU86435.1\| major head subunit [Escherichia coli O157:H7 str. EC4501], gi\|168761518\|... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7 str. Sakai], gi\|1...	472.0	[0..3]	[297..5]
gi\|46581115, gi\|... - gi\|46581115\|ref\|YP_011923.1\| major head subunit, putative [Desulfovibrio vulgaris subsp. vulgaris st...	469.0	[0..2]	[297..3]
gi\|134138568, gi... - gi\|67545318\|ref\|ZP_00423241.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	468.0	[0..1]	[297..1]
VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 /... VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae GN=HI_1505 PE=4 SV=1	463.0	[0..3]	[297..4]
gi\|33147606, gi\|... - gi\|33151386\|ref\|NP_872739.1\| hypothetical protein HD0132 [Haemophilus ducreyi 35000HP], gi\|33147606\|...	462.0	[0..3]	[297..4]
gi\|24346191, gi\|... - gi\|24372266\|ref\|NP_716308.1\| prophage MuSo1, major head subunit, putative [Shewanella oneidensis MR-... SO0675 - prophage MuSo1 major head subunit, putative	459.0	[0..2]	[297..3]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEAQVLEA LQATMSAAYT RGLSAAKPQW NMIATEVPSA GAANFYGWLK DLPGIVEWTG  60
   61 ARQLANLGKH GYSIENKTFE SSISISRDNV DDDQIGQYSV IAQNYGDQVA YFPDTLAYPL 120
  121 LKAGFTTLCY DGQNFFDTDH PLATTPATTF SNVIGDPATD T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEPWFLIDDT KVLKPIVFQN RRPFVFKNMN PNEEYTWFNN KYAAGVDGRC NVGFS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [217-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPQLAIGSKA ALTEANYAAA KKLLLKMKKV DGTPIGTRAT KLVVGPDNEA AAKKLISRML  60
   61 IEGGDTNIYY NDVEIVVSPL VTA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.940	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.917	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.879	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.876	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.876	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.844	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.837	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.829	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.763	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.754	N/A	N/A	d.58.48	MTH1187-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits