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Protein Overview: SO0675

General Information:
Name(s) found: SO0675 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • prophage MuSo1 major head subunit, putative [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAINAAVLQ ALRTMVRSEF QNALTKTEPL YLKIASVVPS NTKSNTYGWL GSMPTMREWI  60
   61 GARVINSIKE HGYSITNRTF ETTIGICRDD VEDEVIGTYK PMVQALAQEG EEFPDDLVFE 120
  121 LLADGFSTLC YDGQNFFDTD HPVNEKHDGT GDNVSVANMA LDAAYTGEPW FLLDTTRPLK 180
  181 PVIFQERRKL DLNTLFNPTD PAVWTNNEFQ FGTDMRCEAG FGFWQMAFAN KRALNADNLW 240
  241 DTIEKMKAFK RDGGKKLKIR PSLLVVPSSL EQAATKLLTR ELIDENGTTV ENELKGKVEL 300
  301 LVVPQL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] MSA 1.020939 View MSA. No confident structure predictions are available.
    2 View Details [186..222] MSA 1.028995 View MSA. No confident structure predictions are available.
    3 View Details [223..306] MSA 14.041996 View MSA. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle