YRC Public Data Repository - Protein Structure Prediction

Protein:	SO0675
Organism:	Shewanella oneidensis
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0675.

Description	E-value	Query Range	Subject Range
gi\|57904725 - gi\|57904725\|gb\|AAW58970.1\| major head subunit [Cloning vector MuNXKan] CAPSD_BPMU - Major capsid protein OS=Enterobacteria phage Mu GN=T PE=1 SV=1	523.0	[0..3]	[306..2]
gi\|188490769, gi... - gi\|75513089\|ref\|ZP_00735551.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli 53... gi\|194430091, gi... - gi\|75208650\|ref\|ZP_00708954.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli B1...	522.0	[0..3]	[306..2]
gi\|25357758 - pir\|\|F91250 probable major head subunit [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|217324925, gi... - gi\|217324925\|ref\|ZP_03441009.1\| major head subunit [Escherichia coli O157:H7 str. TW14588], gi\|21732... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7], gi\|13364450\|dbj... gi\|189368019, gi... - gi\|189368019\|gb\|EDU86435.1\| major head subunit [Escherichia coli O157:H7 str. EC4501], gi\|168761518\|... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7 str. Sakai], gi\|1...	508.0	[0..4]	[306..5]
gi\|6900377, gi\|1... - gi\|6900377\|emb\|CAB71989.1\| hypothetical protein [Neisseria meningitidis], pir\|\|B81811 conserved hypo... gi\|15794735, gi\|... - gi\|7380484\|emb\|CAB85070.1\| conserved hypothetical protein [Neisseria meningitidis Z2491], gi\|2187686...	500.0	[0..3]	[306..2]
VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 /... VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae GN=HI_1505 PE=4 SV=1	495.0	[0..1]	[306..1]
gi\|33147606, gi\|... - gi\|33151386\|ref\|NP_872739.1\| hypothetical protein HD0132 [Haemophilus ducreyi 35000HP], gi\|33147606\|...	491.0	[0..1]	[306..1]
gi\|46581115, gi\|... - gi\|46581115\|ref\|YP_011923.1\| major head subunit, putative [Desulfovibrio vulgaris subsp. vulgaris st...	488.0	[0..1]	[306..1]
gi\|160875257, gi... - gi\|160875257\|ref\|YP_001554573.1\| prophage MuSo1, major head subunit, putative [Shewanella baltica OS...	485.0	[0..1]	[306..1]
gi\|32029864, gi\|... - gi\|32029864\|ref\|ZP_00132818.1\| COG4397: Mu-like prophage major head subunit gpT [Haemophilus somnus ...	463.0	[0..3]	[306..5]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAINAAVLQ ALRTMVRSEF QNALTKTEPL YLKIASVVPS NTKSNTYGWL GSMPTMREWI  60
   61 GARVINSIKE HGYSITNRTF ETTIGICRDD VEDEVIGTYK PMVQALAQEG EEFPDDLVFE 120
  121 LLADGFSTLC YDGQNFFDTD HPVNEKHDGT GDNVSVANMA LDAAYTGEPW FLLDTTRPLK 180
  181 PVIFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [186-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERRKLDLNTL FNPTDPAVWT NNEFQFGTDM RCEAGFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [223-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FWQMAFANKR ALNADNLWDT IEKMKAFKRD GGKKLKIRPS LLVVPSSLEQ AATKLLTREL  60
   61 IDENGTTVEN ELKGKVELLV VPQL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.816	N/A	N/A	d.58.10	Acylphosphatase-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits