YRC Public Data Repository - Protein Structure Prediction

Protein:	SO0675
Organism:	Shewanella oneidensis
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0675.

Description	E-value	Query Range	Subject Range
gi\|57904725 - gi\|57904725\|gb\|AAW58970.1\| major head subunit [Cloning vector MuNXKan] CAPSD_BPMU - Major capsid protein OS=Enterobacteria phage Mu GN=T PE=1 SV=1	523.0	[0..3]	[306..2]
gi\|188490769, gi... - gi\|75513089\|ref\|ZP_00735551.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli 53... gi\|194430091, gi... - gi\|75208650\|ref\|ZP_00708954.1\| COG4397: Mu-like prophage major head subunit gpT [Escherichia coli B1...	522.0	[0..3]	[306..2]
gi\|25357758 - pir\|\|F91250 probable major head subunit [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|217324925, gi... - gi\|217324925\|ref\|ZP_03441009.1\| major head subunit [Escherichia coli O157:H7 str. TW14588], gi\|21732... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7], gi\|13364450\|dbj... gi\|189368019, gi... - gi\|189368019\|gb\|EDU86435.1\| major head subunit [Escherichia coli O157:H7 str. EC4501], gi\|168761518\|... gi\|13364450, gi\|... - gi\|15834228\|ref\|NP_313001.1\| putative major head subunit [Escherichia coli O157:H7 str. Sakai], gi\|1...	508.0	[0..4]	[306..5]
gi\|6900377, gi\|1... - gi\|6900377\|emb\|CAB71989.1\| hypothetical protein [Neisseria meningitidis], pir\|\|B81811 conserved hypo... gi\|15794735, gi\|... - gi\|7380484\|emb\|CAB85070.1\| conserved hypothetical protein [Neisseria meningitidis Z2491], gi\|2187686...	500.0	[0..3]	[306..2]
VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 /... VPT_HAEIN - Mu-like prophage FluMu major head subunit OS=Haemophilus influenzae GN=HI_1505 PE=4 SV=1	495.0	[0..1]	[306..1]
gi\|33147606, gi\|... - gi\|33151386\|ref\|NP_872739.1\| hypothetical protein HD0132 [Haemophilus ducreyi 35000HP], gi\|33147606\|...	491.0	[0..1]	[306..1]
gi\|46581115, gi\|... - gi\|46581115\|ref\|YP_011923.1\| major head subunit, putative [Desulfovibrio vulgaris subsp. vulgaris st...	488.0	[0..1]	[306..1]
gi\|160875257, gi... - gi\|160875257\|ref\|YP_001554573.1\| prophage MuSo1, major head subunit, putative [Shewanella baltica OS...	485.0	[0..1]	[306..1]
gi\|32029864, gi\|... - gi\|32029864\|ref\|ZP_00132818.1\| COG4397: Mu-like prophage major head subunit gpT [Haemophilus somnus ...	463.0	[0..3]	[306..5]

Back

Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAINAAVLQ ALRTMVRSEF QNALTKTEPL YLKIASVVPS NTKSNTYGWL GSMPTMREWI  60
   61 GARVINSIKE HGYSITNRTF ETTIGICRDD VEDEVIGTYK PMVQALAQEG EEFPDDLVFE 120
  121 LLADGFSTLC YDGQNFFDTD HPVNEKHDGT GDNVSVANMA LDAAYTGEPW FLLDTTRPLK 180
  181 PVIFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [186-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERRKLDLNTL FNPTDPAVWT NNEFQFGTDM RCEAGFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [223-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FWQMAFANKR ALNADNLWDT IEKMKAFKRD GGKKLKIRPS LLVVPSSLEQ AATKLLTREL  60
   61 IDENGTTVEN ELKGKVELLV VPQL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.816	N/A	N/A	d.58.10	Acylphosphatase-like
View	Download	0.801	N/A	N/A	d.58.10	Acylphosphatase-like
View	Download	0.756	N/A	N/A	d.95.2	Homing endonucleases
View	Download	0.740	N/A	N/A	d.58.58	Description not found.
View	Download	0.734	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.733	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.729	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.713	N/A	N/A	d.68.3	SirA-like
View	Download	0.704	N/A	N/A	a.130.1	Chorismate mutase II
View	Download	0.702	N/A	N/A	d.58.48	MTH1187-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits