YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374120, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374120, gi|....

Description	E-value	Query Range	Subject Range
gi\|78363795, gi\|... - gi\|78485509\|ref\|YP_391434.1\| septum site-determining protein MinD [Thiomicrospira crunogena XCL-2], ...	223.0	[0..1]	[268..1]
gi\|83632622, gi\|... - gi\|83644579\|ref\|YP_433014.1\| septum site-determining protein MinD [Hahella chejuensis KCTC 2396], gi...	223.0	[0..1]	[268..1]
gi\|78509595, gi\|... - gi\|78691002\|ref\|ZP_00855635.1\| Septum site-determining protein MinD [Shewanella sp. MR-7], gi\|785095... gi\|113970511, gi... - gi\|113970511\|ref\|YP_734304.1\| septum site-determining protein MinD [Shewanella sp. MR-4], gi\|1138851...	222.0	[0..1]	[269..1]
gi\|68513979, gi\|... - gi\|68548300\|ref\|ZP_00587810.1\| Septum site-determining protein MinD [Shewanella amazonensis SB2B], g...	222.0	[0..1]	[269..1]
gi\|229515341, gi... - gi\|229515341\|ref\|ZP_04404801.1\| septum site-determining protein MinD [Vibrio cholerae TMA 21], gi\|22... gi\|229507949, gi... - gi\|229507949\|ref\|ZP_04397454.1\| septum site-determining protein MinD [Vibrio cholerae BX 330286], gi... gi\|227082089, gi... - gi\|227082089\|ref\|YP_002810640.1\| septum site-determining protein MinD [Vibrio cholerae M66-2], gi\|22... gi\|229370149, gi... - gi\|229607494\|ref\|YP_002878142.1\| septum site-determining protein MinD [Vibrio cholerae MJ-1236], gi\|... gi\|229340799, gi... - gi\|229521874\|ref\|ZP_04411291.1\| septum site-determining protein MinD [Vibrio cholerae TM 11079-80], ... gi\|229343641, gi... - gi\|229518952\|ref\|ZP_04408395.1\| septum site-determining protein MinD [Vibrio cholerae RC9], gi\|22934... gi\|153829258, gi... - gi\|153829258\|ref\|ZP_01981925.1\| septum site-determining protein MinD [Vibrio cholerae 623-39], gi\|14... gi\|153826373, gi... - gi\|153826373\|ref\|ZP_01979040.1\| septum site-determining protein MinD [Vibrio cholerae MZO-2], gi\|149... gi\|9656499, gi\|1... - gi\|9656499\|gb\|AAF95108.1\| septum site-determining protein MinD [Vibrio cholerae O1 biovar El Tor str... gi\|227118407, gi... - gi\|227118407\|ref\|YP_002820303.1\| septum site-determining protein MinD [Vibrio cholerae O395], gi\|227... gi\|11277888 - pir\|\|C82136 septum site-determining protein MinD VC1960 [imported] - Vibrio cholerae (strain N16961 ... gi\|197751614, gi... - gi\|254286889\|ref\|ZP_04961841.1\| septum site-determining protein MinD [Vibrio cholerae AM-19226], gi\|... gi\|121728627, gi... - gi\|121728627\|ref\|ZP_01681646.1\| septum site-determining protein MinD [Vibrio cholerae V52], gi\|12162... gi\|121590652, gi... - gi\|121590652\|ref\|ZP_01677986.1\| septum site-determining protein MinD [Vibrio cholerae 2740-80], gi\|1... gi\|153803707, gi... - gi\|153803707\|ref\|ZP_01958293.1\| septum site-determining protein MinD [Vibrio cholerae MZO-3], gi\|124... gi\|153217399, gi... - gi\|153217399\|ref\|ZP_01951150.1\| septum site-determining protein MinD [Vibrio cholerae 1587], gi\|1241... gi\|225354512, gi... - gi\|254226805\|ref\|ZP_04920377.1\| septum site-determining protein MinD [Vibrio cholerae V51], gi\|22535... gi\|254849046, gi... - gi\|254849046\|ref\|ZP_05238396.1\| septum site-determining protein MinD [Vibrio cholerae MO10], gi\|2548... gi\|229351780, gi... - gi\|229511815\|ref\|ZP_04401294.1\| septum site-determining protein MinD [Vibrio cholerae B33], gi\|22935... gi\|126509176, gi... - gi\|153820285\|ref\|ZP_01972952.1\| septum site-determining protein MinD [Vibrio cholerae NCTC 8457], gi...	222.0	[0..1]	[268..7]
gi\|75827274 - gi\|75827274\|ref\|ZP_00756709.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|229529016, gi... - gi\|229529016\|ref\|ZP_04418406.1\| septum site-determining protein MinD [Vibrio cholerae 12129(1)], gi\|... gi\|75830768, gi\|... - gi\|75830768\|ref\|ZP_00760040.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|75815065 - gi\|75815065\|ref\|ZP_00745593.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|75818634, gi\|... - gi\|75818634\|ref\|ZP_00748771.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... tr\|A0A086SPV0\|A0... - Site-determining protein OS=Vibrio cholerae GN=minD PE=3 SV=1	221.0	[0..1]	[268..1]
gi\|82718489, gi\|... - gi\|82744150\|ref\|ZP_00906742.1\| Septum site-determining protein MinD [Shewanella sp. W3-18-1], gi\|827... gi\|124549380, gi... - gi\|124549380\|ref\|ZP_01707640.1\| septum site-determining protein MinD [Shewanella putrefaciens 200], ... gi\|77810313, gi\|... - gi\|77814661\|ref\|ZP_00813917.1\| Septum site-determining protein MinD [Shewanella putrefaciens CN-32],...	221.0	[0..1]	[269..1]
gi\|90438964, gi\|... - gi\|90580079\|ref\|ZP_01235887.1\| putative septum site-determining protein MinD [Vibrio angustum S14], ...	221.0	[0..1]	[268..1]
gi\|149745909, gi... - gi\|153840427\|ref\|ZP_01993094.1\| septum site-determining protein MinD [Vibrio parahaemolyticus AQ3810... gi\|28805860, gi\|... - gi\|28897647\|ref\|NP_797252.1\| septum site-determining protein MinD [Vibrio parahaemolyticus RIMD 2210... gi\|28805860 - gi\|28805860\|dbj\|BAC59136.1\| septum site-determining protein MinD [Vibrio parahaemolyticus RIMD 22106...	221.0	[0..1]	[268..1]
gi\|76877326, gi\|... - gi\|77362415\|ref\|YP_341989.1\| cell division inhibitor, membrane ATPase, activates MinC [Pseudoalterom...	221.0	[0..1]	[268..1]

Back

Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIIVVTSG KGGVGKTTSS AAIATGLAIQ GHKTVVIDFD IGLRNLDLIM GCERRVVYDF  60
   61 VNVINGEANL NQALIKDKRC EKLYVLPASQ TRDKDALTKE GVGRVLDDLA KEFEFIICDS 120
  121 PAGIEQGAMM ALYFADIAIV TTNPEVSSVR DSDRILGMLQ SKSRRAELSL EPIKEYLLLT 180
  181 RYSPSRVKSG EMLSVDDVKE ILAIDLLGVI PESQSVLKAS NSGVPVIIDQ ESDAGAAYSD 240
  241 TVARLLGEDV PVRFITEEKK GFLQRIFGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1g3qA
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	2.50267116518023	bayes_pls_golite062009
pyrophosphatase activity	2.42957469111629	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.40943522107938	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.40733363368781	bayes_pls_golite062009
binding	1.8576045268999	bayes_pls_golite062009
hydrolase activity	1.10968068468793	bayes_pls_golite062009
catalytic activity	0.458437698837681	bayes_pls_golite062009
protein binding	0.378225828131122	bayes_pls_golite062009
nucleotide binding	0.0601614967638421	bayes_pls_golite062009
purine nucleotide binding	0.0518926528648858	bayes_pls_golite062009
purine ribonucleotide binding	0.0231586743339878	bayes_pls_golite062009
ribonucleotide binding	0.0231035204040646	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: