YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374030, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374030, gi|....

Description	E-value	Query Range	Subject Range
gi\|108563462, gi... - gi\|108563462\|ref\|YP_627778.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase [Helicobacter pylori HPAG1]...	188.0	[0..6]	[212..1]
gi\|7436631 - pir\|\|C64657 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) - Helicobacter pylori (strain ... gi\|2314248, gi\|1... - gi\|2314248\|gb\|AAD08142.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase (eda) [Helicobacter pylori 2669...	188.0	[0..6]	[212..1]
gi\|113461739, gi... - gi\|23467619\|ref\|ZP_00123199.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Haemophilus somn...	186.0	[0..3]	[213..1]
gi\|170718550, gi... - gi\|53728725\|ref\|ZP_00131830.2\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Haemophilus somn...	185.0	[0..3]	[213..1]
gi\|32033966 - gi\|32033966\|ref\|ZP_00134222.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Actinobacillus p...	185.0	[0..2]	[212..1]
gi\|109714266, gi... - gi\|109947045\|ref\|YP_664273.1\| 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate ...	183.0	[0..4]	[211..3]
gi\|54308469, gi\|... - gi\|54308469\|ref\|YP_129489.1\| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Ph...	183.0	[0..6]	[213..1]
gi\|90414792, gi\|... - gi\|90414792\|ref\|ZP_01222760.1\| putative 2-keto-3-deoxy-6-phosphogluconate aldolase [Photobacterium p...	181.0	[0..6]	[213..1]
gi\|59714170, gi\|... - gi\|59714170\|ref\|YP_206945.1\| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Vi...	181.0	[0..10]	[213..6]
gi\|68514261, gi\|... - gi\|68548049\|ref\|ZP_00587569.1\| KDPG and KHG aldolase [Shewanella amazonensis SB2B], gi\|68514261\|gb\|E...	180.0	[0..1]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLENNWSLQP QDIFKRSPIV PVMVINKIEH AVPLAKALVA GGISVLEVTL RTPCALEAIT  60
   61 KIAKEVPEAL VGAGTILNEA QLGQAIAAGA QFIITPGATV ELLKAGMQGP VPLIPGVASI 120
  121 SEVMTGMALG YTHFKFFPAE ASGGVDALKA FSGPLADIRF CPTGGITPSS YKDYLALKNV 180
  181 DCIGGSWIAP TDAMEQGDWD RITQLCKEAI GGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	1euaA
Description:	KDPG aldolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-dehydro-3-deoxy-phosphogluconate aldolase activity	3.5031381823147	bayes_pls_golite062009
catalytic activity	2.67031204377352	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	0.840107349031025	bayes_pls_golite062009
lyase activity	0.740424046054758	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	0.643395146148785	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009
transaldolase activity	0.337067552042715	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: