YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348497, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	404 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348497, gi|....

Description	E-value	Query Range	Subject Range
gi\|113527019, gi... - gi\|113868243\|ref\|YP_726732.1\| aminotransferase AlaT [Ralstonia eutropha H16], gi\|113527019\|emb\|CAJ93...	347.0	[0..1]	[404..1]
gi\|72119095, gi\|... - gi\|73541682\|ref\|YP_296202.1\| aminotransferase AlaT [Ralstonia eutropha JMP134], gi\|72119095\|gb\|AAZ61...	345.0	[0..2]	[404..18]
gi\|94310905, gi\|... - gi\|94310905\|ref\|YP_584115.1\| aminotransferase, class I and II [Ralstonia metallidurans CH34], gi\|933...	343.0	[0..2]	[404..46]
gi\|90440101, gi\|... - gi\|90579268\|ref\|ZP_01235078.1\| aspartate aminotransferase [Vibrio angustum S14], gi\|90440101\|gb\|EAS6...	341.0	[0..1]	[404..1]
AAT_AQUAE - Aspartate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=aspC PE=3 SV=1 AAT_AQUAE - Aspartate aminotransferase OS=Aquifex aeolicus GN=aspC PE=3 SV=1	340.0	[0..1]	[401..1]
gi\|89073240, gi\|... - gi\|89073240\|ref\|ZP_01159770.1\| aspartate aminotransferase [Photobacterium sp. SKA34], gi\|89050950\|gb...	340.0	[0..1]	[404..1]
gi\|84387745, gi\|... - gi\|84387745\|ref\|ZP_00990761.1\| aspartate aminotransferase [Vibrio splendidus 12B01], gi\|84377428\|gb\|...	336.0	[0..1]	[404..1]
gi\|85833703, gi\|... - gi\|86148512\|ref\|ZP_01066800.1\| aspartate aminotransferase [Vibrio sp. MED222], gi\|85833703\|gb\|EAQ518... gi\|218710163, gi... - gi\|218710163\|ref\|YP_002417784.1\| aminotransferase AlaT [Vibrio splendidus LGP32], gi\|218323182\|emb\|C...	335.0	[0..1]	[404..1]
gi\|46914225, gi\|... - gi\|54309787\|ref\|YP_130807.1\| aminotransferase AlaT [Photobacterium profundum SS9], gi\|46914225\|emb\|C...	335.0	[0..1]	[404..1]
gi\|17428341 - gi\|17428341\|emb\|CAD15028.1\| probable aspartate aminotransferase protein [Ralstonia solanacearum GMI1... gi\|17546045 - gi\|17546045\|ref\|NP_519447.1\| aminotransferase AlaT [Ralstonia solanacearum GMI1000]	335.0	[0..1]	[404..1]

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Predicted Domain #1

Region A:
Residues: [1-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPIIKSNKL DTVCYDIRGP VHKEARRLED EGHRILKLNI GNPAPFGFEA PEEIVRDVIL  60
   61 NLPSAQGYCE SKGLFSARKA IVQHYQAQGI YDVDIEDVYI GNGVSELIMM AMQGLLNTAD 120
  121 EILIPSPDYP LWTAAANLAG GKAVHYRCDE EADWFPDLDD IKSKISSRTR GIVLINPNNP 180
  181 TGAVYSKELL LQVVELCREH NLILFADEIY DKILYDEAKH IPAASLSDDI LTVTFNGLSK 240
  241 AYRAAGFRIG WMMLSGNLKA AKSYIEGLDM LASMRLCANV PNQHAIQTAL GGYQSINELI 300
  301 LPSGRLTVQR DTCYELLNQI PGVSVKKPKG ALYAFPKLDM KKFNLRDDER LVLDLLRDKK 360
  361 ILLVHGTAFN WPEPDHLRVV FLPYKEDLTK ALTEFGNFLE TYKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.69897
Match:	1xi9A
Description:	Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
L-aspartate:2-oxoglutarate aminotransferase activity	4.43277563699654	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
transferase activity	0.737426388870721	bayes_pls_golite062009
4-aminobutyrate transaminase activity	0.487922584683825	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	0.390162083170876	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	0.390162083170876	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	0.212259855101758	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds	0.130931097173495	bayes_pls_golite062009
cystathionine beta-lyase activity	0.0833010353195099	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: