YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348028, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348028, gi|....

Description	E-value	Query Range	Subject Range
gi\|82405708, gi\|... - gi\|82496352\|ref\|ZP_00881921.1\| asparaginase family protein [Shewanella sp. MR-4], gi\|82405708\|gb\|EAP...	418.0	[0..1]	[326..18]
gi\|78507177, gi\|... - gi\|78684953\|ref\|ZP_00849734.1\| asparaginase family protein [Shewanella sp. ANA-3], gi\|78507177\|gb\|EA...	417.0	[0..1]	[326..18]
gi\|78510900, gi\|... - gi\|78689740\|ref\|ZP_00854398.1\| asparaginase family protein [Shewanella sp. MR-7], gi\|78510900\|gb\|EAP...	417.0	[0..1]	[326..18]
gi\|82742276, gi\|... - gi\|82742276\|ref\|ZP_00904974.1\| asparaginase family protein [Shewanella sp. W3-18-1], gi\|82720360\|gb\|... gi\|77812040, gi\|... - gi\|77812807\|ref\|ZP_00812090.1\| Peptidase T2, asparaginase 2 [Shewanella putrefaciens CN-32], gi\|7781... gi\|124509777, gi... - gi\|124546725\|ref\|ZP_01705760.1\| peptidase T2, asparaginase 2 [Shewanella putrefaciens 200], gi\|12450...	416.0	[0..1]	[326..18]
gi\|113949933, gi... - gi\|113949933\|ref\|ZP_01435573.1\| peptidase T2, asparaginase 2 [Shewanella baltica OS195], gi\|11390767...	406.0	[0..1]	[326..18]
gi\|126174130, gi... - gi\|68542550\|ref\|ZP_00582278.1\| Peptidase T2, asparaginase 2 [Shewanella baltica OS155], gi\|68519729\|...	404.0	[0..1]	[326..18]
gi\|78359609, gi\|... - gi\|78368336\|ref\|ZP_00838573.1\| Peptidase T2, asparaginase 2 [Shewanella sp. PV-4], gi\|78359609\|gb\|EA...	396.0	[0..1]	[325..18]
gi\|115372571, gi... - gi\|115372571\|ref\|ZP_01459879.1\| L-asparaginase [Stigmatella aurantiaca DW4/3-1], gi\|115370533\|gb\|EAU...	390.0	[0..10]	[325..80]
gi\|108466737, gi... - gi\|108762857\|ref\|YP_629420.1\| asparaginase family protein [Myxococcus xanthus DK 1622], gi\|108466737...	387.0	[0..2]	[325..19]
gi\|68547308, gi\|... - gi\|68547308\|ref\|ZP_00586846.1\| Peptidase T2, asparaginase 2 [Shewanella amazonensis SB2B], gi\|685149...	386.0	[0..6]	[326..5]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQNTHANEK PFAIAIHGGA GTISKANLTP ELRQAYKDKL KEAVDKGSKV LEQGGDSLVA  60
   61 VQTAINVLEN SPLFNAGVGS VYTYDGGHEL DASIMDGKTM NAGAVAGVRH IANPIDLALA 120
  121 VMNKSEHVML SGAGAEEFAL TQGFTLVANS HFDSDARYQQ LLDARQKLQA AQKSEQIAGI 180
  181 EMNDLDYKFG TVGAVALDKN GNLAAGTSTG GMTAKRFGRI GDSPVIGAGT YAENGVCAVS 240
  241 ATGHGEFFIR YQVAGDICAR VKYQQKSILQ AADEVINQRL ITAGGSGGVI AVDHRGNIAT 300
  301 PFNTEGMYRA SRSNGEPAQV MIWQDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	9gafA
Description:	Glycosylasparaginase (aspartylglucosaminidase, AGA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity	3.99955121316975	bayes_pls_golite062009
asparaginase activity	2.94567124791739	bayes_pls_golite062009
asparagine synthase (glutamine-hydrolyzing) activity	2.93045515439744	bayes_pls_golite062009
peptidase activity	1.97100432849331	bayes_pls_golite062009
endopeptidase activity	1.85094474974087	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.80929145813513	bayes_pls_golite062009
hydrolase activity	1.49820844608839	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	0.235585044844293	bayes_pls_golite062009
binding	0.104740933438894	bayes_pls_golite062009
protein binding	0.00621436730716318	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: