YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373350, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	764 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373350, gi|....

Description	E-value	Query Range	Subject Range
gi\|120599423, gi... - gi\|120599423\|ref\|YP_963997.1\| ferrous iron transport protein B [Shewanella sp. W3-18-1], gi\|12055951... gi\|146292581, gi... - gi\|77815115\|ref\|ZP_00814357.1\| Ferrous iron transport protein B:Small GTP-binding protein domain [Sh...	698.0	[0..1]	[764..1]
gi\|113889506, gi... - gi\|78689465\|ref\|ZP_00854127.1\| Ferrous iron transport protein B:Small GTP-binding protein domain [Sh...	696.0	[0..1]	[764..1]
gi\|78685517, gi\|... - gi\|78685517\|ref\|ZP_00850294.1\| Ferrous iron transport protein B:Small GTP-binding protein domain [Sh...	695.0	[0..1]	[764..1]
gi\|113906332, gi... - gi\|160874735\|ref\|YP_001554051.1\| ferrous iron transport protein B [Shewanella baltica OS195], gi\|160...	694.0	[0..1]	[764..1]
gi\|113970839, gi... - gi\|113970839\|ref\|YP_734632.1\| ferrous iron transport protein B [Shewanella sp. MR-4], gi\|113885523\|g...	694.0	[0..1]	[764..1]
gi\|127513445, gi... - gi\|78368740\|ref\|ZP_00838948.1\| Ferrous iron transport protein B:Small GTP-binding protein domain [Sh...	663.0	[0..1]	[764..1]
gi\|90411609, gi\|... - gi\|90411609\|ref\|ZP_01219619.1\| Putative ferrous iron transport protein B [Photobacterium profundum 3...	653.0	[0..4]	[754..2]
gi\|69953648, gi\|... - gi\|69953648\|ref\|ZP_00640708.1\| Ferrous iron transport protein B:Small GTP-binding protein domain [Sh...	652.0	[0..1]	[764..1]
gi\|119766852, gi... - gi\|68547086\|ref\|ZP_00586627.1\| Ferrous iron transport protein B:Small GTP-binding protein domain [Sh...	650.0	[0..1]	[764..1]
gi\|46912680, gi\|... - gi\|54308252\|ref\|YP_129272.1\| putative ferrous iron transport protein B [Photobacterium profundum SS9...	648.0	[0..4]	[754..2]

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Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQFHCVTV GNPNAGKSTL FNALTGANQQ VGNWSGVTVE KKTGHFTLNG ADVYLTDLPG  60
   61 IYDLLPAGNS CDCSLDEQIA QQYLAEQRVD GIINLVDATN IERHLYLTAQ LRELSIPMVV 120
  121 VLNKIDAAIK RGICVDLTKM SQELGCPVIG VCSRDPADVA KVQAQVLDLL QGRVSEAPLL 180
  181 LDYDKQIEAG VQLLCRKDPN LSRGRALAML GNGSGCGSCK NAQLQDEVNT CTQQIAQQGH 240
  241 DIEVMVATTR FNFVERVFQS SVKADGFLTL SDKLDKLVLH PVLGIPVFLF VMYLMFMFSI 300
  301 NIGSAFIDFF DVFAGALLVD HFGALLTNIG APAWVVTILA GG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.221849
Match:	1b23P
Description:	Elongation factor Tu (EF-Tu), domain 2; Elongation factor Tu (EF-Tu); Elongation factor Tu (EF-Tu), N-terminal (G) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	1.95073642969863	bayes_pls_golite062009
pyrophosphatase activity	1.91141407779641	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.9017593265179	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.90014393273511	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.608578860823	bayes_pls_golite062009
transporter activity	1.55572428045529	bayes_pls_golite062009
ATPase activity	1.48474288797022	bayes_pls_golite062009
transmembrane transporter activity	1.38483976298883	bayes_pls_golite062009
ATPase activity, coupled	1.37457738689583	bayes_pls_golite062009
ion transmembrane transporter activity	1.32358677895008	bayes_pls_golite062009
active transmembrane transporter activity	1.24278046928678	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	1.2014318795788	bayes_pls_golite062009
primary active transmembrane transporter activity	1.19670408144267	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.17063957238561	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	1.16918853509059	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	1.16885789920943	bayes_pls_golite062009
hydrolase activity	1.09839981963412	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.05321289029555	bayes_pls_golite062009
cation transmembrane transporter activity	1.01376912193868	bayes_pls_golite062009
binding	0.855534295206446	bayes_pls_golite062009
catalytic activity	0.605053499033488	bayes_pls_golite062009
purine ribonucleotide binding	0.5127850474754	bayes_pls_golite062009
ribonucleotide binding	0.51230334374838	bayes_pls_golite062009
purine nucleotide binding	0.50688037036449	bayes_pls_golite062009
iron ion transmembrane transporter activity	0.499229734997878	bayes_pls_golite062009
nucleotide binding	0.49473184426584	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.462652239329679	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.338494663195175	bayes_pls_golite062009
substrate-specific transporter activity	0.0838665746103899	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [343-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGQGIQTVST FIPVIAALFL GLSILESSGY MARAAFVVDG LMRRIGLPGK AFVPMIVGFG  60
   61 CSVPAIMATR TLGSERERIV TGMMAPFMSC GARLPVYALF AAAFF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.60206
Match:	PF07670.5
Description:	No description for PF07670.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [448-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDSGQNLVFL LYVIGIFAAI GTGLLLRSTL LPGTSSAVVM ELPSYELP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.173925
Match:	PF07664.3
Description:	No description for PF07664.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [496-764]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFKAVMVRTG KRTKSFILGA GKTIVLVVTL LNFINAIGVD GSFGHEDSQA SLLSVASQKV  60
   61 TPIFAPMGIE QDNWPATVGI ITGIFAKEAV VGTLNSLYTN ATPEGSELTP LADSFNEALA 120
  121 TIPANLFGLD LEDPLKLSVG DVSNTEVAAE TQGVATSTFS ALQSGFTTKV AAFSYLLFIL 180
  181 LYTPCVAAMG ALVNEFGTRW ATFAATWTFA LAYGSATVVY QAATFAAHPL QSSLWIGFFL 240
  241 VALVMFYLWL KRKGRRTQQI IPGVRIITE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.568636
Match:	PF07670.5
Description:	No description for PF07670.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: