YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373135, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373135, gi|....

Description	E-value	Query Range	Subject Range
gi\|28869051, gi\|... - gi\|28869051\|ref\|NP_791670.1\| magnesium transporter [Pseudomonas syringae pv. tomato str. DC3000], gi... tr\|Q885I7\|Q885I7... - Magnesium transporter OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=mgtE PE=4 SV=1 gi\|213926552, gi... - gi\|213968619\|ref\|ZP_03396761.1\| magnesium transporter [Pseudomonas syringae pv. tomato T1], gi\|21392...	255.0	[0..1]	[456..23]
gi\|71734684, gi\|... - gi\|71734684\|ref\|YP_275656.1\| magnesium transporter [Pseudomonas syringae pv. phaseolicola 1448A], gi...	254.0	[0..1]	[456..23]
gi\|63257488, gi\|... - gi\|66046781\|ref\|YP_236622.1\| divalent cation transporter [Pseudomonas syringae pv. syringae B728a], ...	252.0	[0..1]	[456..23]
gi\|150963209, gi... - gi\|94417988\|ref\|ZP_01297804.1\| hypothetical protein PaerP_01000137 [Pseudomonas aeruginosa PA7], gi\|... gi\|84316520, gi\|... - gi\|84316520\|ref\|ZP_00964993.1\| COG2239: Mg/Co/Ni transporter MgtE (contains CBS domain) [Pseudomonas... gi\|218773346, gi... - gi\|218893118\|ref\|YP_002441987.1\| putative Mg transporter MgtE [Pseudomonas aeruginosa LESB58], gi\|21... gi\|254245197, gi... - gi\|84322496\|ref\|ZP_00970581.1\| COG2239: Mg/Co/Ni transporter MgtE (contains CBS domain) [Pseudomonas... gi\|15596110, gi\|... - gi\|9946815\|gb\|AAG04302.1\|AE004525_10 probable Mg transporter MgtE [Pseudomonas aeruginosa PAO1], gi\|... gi\|11351518 - pir\|\|D83532 probable Mg transporter MgtE PA0913 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|115584057, gi... - gi\|53727400\|ref\|ZP_00138508.2\| COG2239: Mg/Co/Ni transporter MgtE (contains CBS domain) [Pseudomonas... gi\|107100369 - gi\|107100369\|ref\|ZP_01364287.1\| hypothetical protein PaerPA_01001394 [Pseudomonas aeruginosa PACS2]	252.0	[0..1]	[456..23]
gi\|77460492, gi\|... - gi\|77460492\|ref\|YP_349999.1\| divalent cation transporter [Pseudomonas fluorescens Pf0-1], gi\|7738449...	251.0	[0..1]	[456..23]
gi\|70731844, gi\|... - gi\|70731844\|ref\|YP_261586.1\| magnesium transporter [Pseudomonas fluorescens Pf-5], gi\|68346143\|gb\|AA...	249.0	[0..1]	[456..23]
gi\|95111857 - gi\|95111857\|emb\|CAK16581.1\| magnesium transporter [Pseudomonas entomophila L48] gi\|95111857, gi\|... - gi\|95111857\|emb\|CAK16581.1\| magnesium transporter [Pseudomonas entomophila L48], gi\|104782870\|ref\|YP...	247.0	[0..1]	[456..23]
tr\|I7C3E6\|I7C3E6... - Magnesium transporter OS=Pseudomonas putida (strain DOT-T1E) GN=mgtE PE=4 SV=1 gi\|148546684, gi... - gi\|82737720\|ref\|ZP_00900566.1\| Divalent cation transporter [Pseudomonas putida F1], gi\|82715238\|gb\|E... gi\|26991157, gi\|... - gi\|26991157\|ref\|NP_746582.1\| magnesium transporter [Pseudomonas putida KT2440], gi\|24986200\|gb\|AAN70...	244.0	[0..1]	[456..23]
gi\|45521326, gi\|... - gi\|91774662\|ref\|YP_544418.1\| magnesium transporter [Methylobacillus flagellatus KT], gi\|91708649\|gb\|...	241.0	[0..1]	[456..22]
gi\|86606349, gi\|... - gi\|86606349\|ref\|YP_475112.1\| magnesium transporter [Synechococcus sp. JA-3-3Ab], gi\|86554891\|gb\|ABC9... gi\|86606349 - gi\|86606349\|ref\|YP_475112.1\| magnesium transporter [Cyanobacteria bacterium Yellowstone A-Prime]	241.0	[0..22]	[455..27]

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Predicted Domain #1

Region A:
Residues: [1-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEHEAEYET NTQADVGQVV QQLTEVEGEE QAEVFSEILN EAEPGTIALA LESLPLDERY  60
   61 ERWQQVEFSE RVTVLSLMRA DPRMGILKQM PDNEVDLLFA QLSPEDLIEW SDYLPESFTD 120
  121 RALAQMGERQ RQRFELYDQY SENEIGRYTD HQMLVLSDKA TVAQAQRFFR RIELDCNDNL 180
  181 FIVDEADKYL GTVRRYDIFK HEPHEPLISL LSEDSRALTA NTTLLDAAEA IEHSREIELP 240
  241 VIDDAGELIG RVTLRAATAL VREHYEAQLM ATAGMDESDD LFAPILKGAQ RRAVWLGINL 300
  301 LTAFLASATI GLFENVLSQV VALAVLMPIV ASMGGIAGSQ SLTLMIRGMA MGQISAGNLF 360
  361 SLMKNELGIG LVNGTLWAIV IGLVAGWWFA DSIIGIVIGC AILINMAVAA LAGVFVPMIL 420
  421 QRFNQDAALS GSVILTTVTD VVGFFTFLGM ATILYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	2yvxA
Description:	No description for 2yvxA was found.

Predicted functions:

Term	Confidence	Notes
magnesium ion transmembrane transporter activity	5.70421936582156	bayes_pls_golite062009
ion transmembrane transporter activity	4.33792188010109	bayes_pls_golite062009
metal ion transmembrane transporter activity	4.32293051865628	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.93353180499293	bayes_pls_golite062009
cation transmembrane transporter activity	3.62139215429434	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.05955979064833	bayes_pls_golite062009
ion channel activity	2.96289511581809	bayes_pls_golite062009
substrate-specific channel activity	2.85393728592978	bayes_pls_golite062009
channel activity	2.83666655624333	bayes_pls_golite062009
passive transmembrane transporter activity	2.83666655624333	bayes_pls_golite062009
voltage-gated ion channel activity	2.80192263321943	bayes_pls_golite062009
voltage-gated channel activity	2.77911418383955	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	2.58754688276363	bayes_pls_golite062009
transporter activity	2.21524357108065	bayes_pls_golite062009
gated channel activity	2.18781915118831	bayes_pls_golite062009
transmembrane transporter activity	2.10896266379801	bayes_pls_golite062009
substrate-specific transporter activity	2.087339200694	bayes_pls_golite062009
anion transmembrane transporter activity	1.37302726288049	bayes_pls_golite062009
chloride channel activity	0.854272043830279	bayes_pls_golite062009
anion channel activity	0.854272043830279	bayes_pls_golite062009
binding	0.501912616492394	bayes_pls_golite062009
protein binding	0.00263529689512498	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: