YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346904, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346904, gi|....

Description	E-value	Query Range	Subject Range
gi\|20515183, gi\|... - gi\|20806727\|ref\|NP_621898.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20806727 - gi\|20806727\|ref\|NP_621898.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478068, gi... - gi\|254478068\|ref\|ZP_05091451.1\| Periplasmic binding proteins and sugar binding domain of the LacI fa...	275.0	[0..2]	[334..7]
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	273.0	[0..2]	[334..7]
gi\|76797419, gi\|... - gi\|76797419\|ref\|ZP_00779738.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241882990, gi... - gi\|241904637\|ref\|ZP_04789316.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	268.0	[0..2]	[334..7]
gi\|89209818, gi\|... - gi\|89209818\|ref\|ZP_01188212.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti...	265.0	[0..2]	[333..7]
PURR_VIBVU - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus GN=purR PE=3 SV=1 PURR_VIBVY - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus (strain YJ016) GN=purR PE=3 SV=1 PURR_VIBVU - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus (strain CMCP6) GN=purR PE=3 SV=1	256.0	[0..2]	[337..6]
gi\|51891908, gi\|... - gi\|51891908\|ref\|YP_074599.1\| LacI family transcriptional repressor [Symbiobacterium thermophilum IAM...	255.0	[0..2]	[337..5]

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Predicted Domain #1

Region A:
Residues: [1-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKFWQALLT LTTFSLLCSP VAKANPQSWP LEQRSPFNAK IQQSRALDYL PLTKAQQAWR  60
   61 LCVLVPHLKD AYWIGIDYGL IQHAKHLGVS LDLFEAGSYY HQDKQLAQLR SCMSGDYDAI 120
  121 LLGAVSPNLL EHFPLPLSKP IIALVNKLNS DQVLTHIGVN WYQMGLRAGQ FIKADAKVHT 180
  181 PTQPTTLALL AGPENVGGTD LVEQGIRHAL EGSNVSISAI QHADNNRNLY RDQLQILLKA 240
  241 QQPNYILGSA VAIEAAVSTL KQKHMTQDIK LVSSYLSPAI LRGLKRQKVL YSNDDLVVLQ 300
  301 GKLAIDVAVK QLEGATPFGD IGPAIVGRTM SANTQSELSF SLAEADFYPL YQVRPPSLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	1jh9A
Description:	Purine repressor (PurR), N-terminal domain; Purine repressor (PurR), C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.58080550382179	bayes_pls_golite062009
transcription regulator activity	1.25602450317772	bayes_pls_golite062009
signal transducer activity	0.96140381988106	bayes_pls_golite062009
molecular transducer activity	0.96140381988106	bayes_pls_golite062009
transcription factor activity	0.60760584832227	bayes_pls_golite062009
DNA binding	0.49435758089932	bayes_pls_golite062009
receptor activity	0.34490133946623	bayes_pls_golite062009
nucleic acid binding	0.31566974251112	bayes_pls_golite062009
transmembrane receptor activity	0.08341235012603	bayes_pls_golite062009
G-protein coupled receptor activity	0.06019622148087	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: