YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372728, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372728, gi|....

Description	E-value	Query Range	Subject Range
gi\|78713607, gi\|... - gi\|78780108\|ref\|YP_398220.1\| Mg2+ transporter [Prochlorococcus marinus str. MIT 9312], gi\|78713607\|g...	244.0	[0..3]	[457..12]
gi\|33634404, gi\|... - gi\|33862186\|ref\|NP_893747.1\| Mg2+ transporter [Prochlorococcus marinus subsp. pastoris str. CCMP1986...	239.0	[0..3]	[457..13]
gi\|71675158, gi\|... - gi\|71675158\|ref\|ZP_00672904.1\| Divalent cation transporter [Trichodesmium erythraeum IMS101], gi\|716...	239.0	[0..8]	[454..19]
gi\|222527232, gi... - gi\|222527232\|ref\|YP_002571703.1\| magnesium transporter [Chloroflexus sp. Y-400-fl], gi\|222451111\|gb\|... gi\|76167145, gi\|... - gi\|76258059\|ref\|ZP_00765716.1\| Divalent cation transporter [Chloroflexus aurantiacus J-10-fl], gi\|76...	239.0	[0..17]	[454..12]
gi\|23098679, gi\|... - gi\|23098679\|ref\|NP_692145.1\| magnesium (Mg2+) transporter [Oceanobacillus iheyensis HTE831], gi\|2277...	237.0	[0..14]	[452..18]
gi\|72383046, gi\|... - gi\|72383046\|ref\|YP_292401.1\| Mg2+ transporter [Prochlorococcus marinus str. NATL2A], gi\|72002896\|gb\|...	236.0	[0..9]	[453..20]
gi\|86606349, gi\|... - gi\|86606349\|ref\|YP_475112.1\| magnesium transporter [Synechococcus sp. JA-3-3Ab], gi\|86554891\|gb\|ABC9... gi\|86606349 - gi\|86606349\|ref\|YP_475112.1\| magnesium transporter [Cyanobacteria bacterium Yellowstone A-Prime]	235.0	[0..17]	[454..28]
gi\|42528218, gi\|... - gi\|42528218\|ref\|NP_973316.1\| magnesium transporter [Treponema denticola ATCC 35405], gi\|41819488\|gb\|...	233.0	[0..7]	[451..1]
gi\|4981710, gi\|1... - gi\|4981710\|gb\|AAD36237.1\|AE001773_6 Mg2+ transporter MgtE, putative [Thermotoga maritima MSB8], gi\|1... gi\|7449350 - pir\|\|G72287 hypothetical protein TM1161 - Thermotoga maritima (strain MSB8) gi\|170176937, gi... - gi\|170289434\|ref\|YP_001739672.1\| response regulator receiver protein [Thermotoga sp. RQ2], gi\|170176...	233.0	[0..13]	[452..5]
gi\|7449346 - pir\|\|S77552 Mg2+ transport protein - Synechocystis sp. (strain PCC 6803) gi\|1652477, gi\|1... - gi\|1652477\|dbj\|BAA17399.1\| Mg2+ transporter [Synechocystis sp. PCC 6803], gi\|16329991\|ref\|NP_440719....	233.0	[0..1]	[454..8]

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Predicted Domain #1

Region A:
Residues: [1-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMNNNPKNT KQIVVAIQNI LEQRNTAGIT ALAKERHPAD IAAVLGSFTQ PQQLQFLQLV  60
   61 PAKFAADLFR YLSDELQAAL VQQLDKTTLS SLLLTMAADE RADLYNLLEP EQQKLLLPVL 120
  121 AQAKREDMRT LAAYDKTKVG AAMTSDYTLL NSRHTAAQAI EMLRTETADK ETIYQAYVVD 180
  181 MLGRLIGTVS LRQLLLALPE ERVVDFMKPN PIALDANALC QEAVQMIAHY DLLALPIING 240
  241 KGQLVGIVTY DDAMDIASSQ VDVEFTKNAA IGNIEHNLKT ASIGLLYRKR VTWLVILVFG 300
  301 NIFSGAGIAF FEDTIASYVS LVFFLPLLID SGGNAGSQSA TLMVRALATG EVILKDWVSL 360
  361 LGRELGVAGL LGASMALAVS LLGFWRGGPE IALVVALTMQ IVVIIGSLIG MSLPFLLSKL 420
  421 KMDPASASAP LITSIADIIG VLVYFSIATM ILDLPVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	2yvxA
Description:	No description for 2yvxA was found.

Predicted functions:

Term	Confidence	Notes
magnesium ion transmembrane transporter activity	8.49541078546556	bayes_pls_golite062009
metal ion transmembrane transporter activity	7.00605533938461	bayes_pls_golite062009
cation transmembrane transporter activity	6.18220777748445	bayes_pls_golite062009
ion transmembrane transporter activity	6.07798698048393	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.69210304834605	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.65569194985625	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	5.33413280536558	bayes_pls_golite062009
transporter activity	3.87852532381405	bayes_pls_golite062009
substrate-specific transporter activity	3.79338887641735	bayes_pls_golite062009
transmembrane transporter activity	3.78746276569027	bayes_pls_golite062009
ion channel activity	2.96289511581809	bayes_pls_golite062009
substrate-specific channel activity	2.85393728592978	bayes_pls_golite062009
channel activity	2.83666655624333	bayes_pls_golite062009
passive transmembrane transporter activity	2.83666655624333	bayes_pls_golite062009
voltage-gated ion channel activity	2.80192263321943	bayes_pls_golite062009
voltage-gated channel activity	2.77911418383955	bayes_pls_golite062009
gated channel activity	2.18781915118831	bayes_pls_golite062009
anion transmembrane transporter activity	1.37302726288049	bayes_pls_golite062009
chloride channel activity	0.854272043830279	bayes_pls_golite062009
anion channel activity	0.854272043830279	bayes_pls_golite062009
binding	0.501912616492394	bayes_pls_golite062009
protein binding	0.00263529689512498	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: