YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372426, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372426, gi|....

Description	E-value	Query Range	Subject Range
gi\|94417064, gi\|... - gi\|94417064\|ref\|ZP_01296886.1\| hypothetical protein PaerP_01001260 [Pseudomonas aeruginosa PA7], gi\|...	209.0	[0..5]	[260..267]
gi\|254236895, gi... - gi\|84319222\|ref\|ZP_00967623.1\| COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Pse... gi\|126196065, gi... - gi\|84325135\|ref\|ZP_00973175.1\| COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Pse... gi\|46164612, gi\|... - gi\|46164612\|ref\|ZP_00205122.1\| COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Pse... gi\|11350727, gi\|... - gi\|4887203\|gb\|AAD32230.1\|AF147448_1 penicillin-binding protein 2 [Pseudomonas aeruginosa], pir\|\|G831... gi\|218769939, gi... - gi\|218889716\|ref\|YP_002438580.1\| penicillin-binding protein 2 [Pseudomonas aeruginosa LESB58], gi\|21... gi\|9950195, gi\|1... - gi\|9950195\|gb\|AAG07390.1\|AE004817_14 penicillin-binding protein 2 [Pseudomonas aeruginosa PAO1], gi\|... gi\|107103518 - gi\|107103518\|ref\|ZP_01367436.1\| hypothetical protein PaerPA_01004588 [Pseudomonas aeruginosa PACS2]	208.0	[0..5]	[260..267]
gi\|28855193, gi\|... - gi\|28871940\|ref\|NP_794559.1\| penicillin-binding protein [Pseudomonas syringae pv. tomato str. DC3000... tr\|Q87VW0\|Q87VW0... - Penicillin-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4825 PE=4 SV=...	206.0	[0..5]	[260..267]
gi\|71733227, gi\|... - gi\|71733227\|ref\|YP_276523.1\| penicillin-binding protein 2 [Pseudomonas syringae pv. phaseolicola 144...	206.0	[0..5]	[260..267]
gi\|63258299, gi\|... - gi\|66047592\|ref\|YP_237433.1\| peptidoglycan glycosyltransferase [Pseudomonas syringae pv. syringae B7...	205.0	[0..5]	[260..267]
gi\|196253824, gi... - gi\|196253824\|ref\|ZP_03152431.1\| Peptidoglycan glycosyltransferase [Clostridium thermocellum DSM 4150... gi\|67916486, gi\|... - gi\|67916486\|ref\|ZP_00510195.1\| Peptidoglycan glycosyltransferase [Clostridium thermocellum ATCC 2740...	205.0	[0..6]	[264..253]
tr\|E4R6Z4\|E4R6Z4... - Peptidoglycan glycosyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4590 PE=4 SV=1 gi\|148549884, gi... - gi\|82738228\|ref\|ZP_00901065.1\| penicillin-binding protein 2 [Pseudomonas putida F1], gi\|82714724\|gb\|... tr\|I7BZF2\|I7BZF2... - Peptidoglycan glycosyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3684 PE=4 SV=1	205.0	[0..5]	[260..267]
gi\|24986566, gi\|... - gi\|26991487\|ref\|NP_746912.1\| penicillin-binding protein 2 [Pseudomonas putida KT2440], gi\|24986566\|g...	205.0	[0..5]	[260..267]
gi\|95112754 - gi\|95112754\|emb\|CAK17482.1\| penicillin-binding protein 2 [Pseudomonas entomophila L48] gi\|104783767, gi... - gi\|95112754\|emb\|CAK17482.1\| penicillin-binding protein 2 [Pseudomonas entomophila L48], gi\|104783767...	205.0	[0..5]	[260..270]
gi\|21673401, gi\|... - gi\|21673401\|ref\|NP_661466.1\| penicillin-binding protein 2 [Chlorobium tepidum TLS], gi\|21646500\|gb\|A...	204.0	[0..6]	[264..256]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLALSAVL VVASIVGMPA MANEWQEKPS WNTHFSEHKA QGVIVLWNEN KQQGFTNNLK  60
   61 RANQAFLPAS TFKIPNSLIA LDLGVVKDEH QVFKWDGQTR DIAAWNRDHD LITAMKYSVV 120
  121 PVYQEFARQI GQARMSKMLH AFDYGNEDIS GNLDSFWLDG GIRISATEQV AFLRKLYHNK 180
  181 LHVSERSQRI VKQAMLTEAN SDYIIRAKTG YSTRIEPQIG WWVGWVELDD NVWFFAMNMD 240
  241 MPTADGLGLR QAITKEVLKQ EKIIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.045757
Match:	1e3uD
Description:	Class D beta-lactamase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
beta-lactamase activity	6.11754430606414	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	4.78031291375234	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
hydrolase activity	1.60399436620363	bayes_pls_golite062009
peptidase activity	1.19806036181576	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.93520664618869	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.9301046317358	bayes_pls_golite062009
serine hydrolase activity	0.7685205097747	bayes_pls_golite062009
serine-type peptidase activity	0.76747998716775	bayes_pls_golite062009
exopeptidase activity	0.373099549833319	bayes_pls_golite062009
carboxypeptidase activity	0.22611872796164	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: