YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346396, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346396, gi|....

Description	E-value	Query Range	Subject Range
gi\|117614212, gi... - gi\|78685117\|ref\|ZP_00849897.1\| Deoxyribonuclease I [Shewanella sp. ANA-3], gi\|78507043\|gb\|EAP20556.1...	419.0	[0..2]	[258..1]
gi\|78690333, gi\|... - gi\|78690333\|ref\|ZP_00854981.1\| Deoxyribonuclease I [Shewanella sp. MR-7], gi\|78510245\|gb\|EAP23619.1\|...	418.0	[0..2]	[258..1]
gi\|82405361, gi\|... - gi\|82496593\|ref\|ZP_00882159.1\| Deoxyribonuclease I [Shewanella sp. MR-4], gi\|82405361\|gb\|EAP46035.1\|...	418.0	[0..2]	[258..1]
gi\|82394536 - gi\|82394536\|gb\|ABB72357.1\| endonuclease I precursor [Vibrio diabolicus]	409.0	[0..18]	[249..4]
gi\|160859486, gi... - gi\|160873964\|ref\|YP_001553280.1\| deoxyribonuclease I [Shewanella baltica OS195], gi\|160859486\|gb\|ABX...	407.0	[0..2]	[258..1]
gi\|116184480, gi... - gi\|75855130\|ref\|ZP_00762791.1\| COG2356: Endonuclease I [Vibrio sp. Ex25], gi\|254230222\|ref\|ZP_049236...	406.0	[0..18]	[249..4]
gi\|28807619, gi\|... - gi\|28899383\|ref\|NP_798988.1\| extracellular deoxyribonuclease precursor [Vibrio parahaemolyticus RIMD... gi\|28807619 - gi\|28807619\|dbj\|BAC60872.1\| extracellular deoxyribonuclease precursor [Vibrio parahaemolyticus RIMD ... gi\|153839190, gi... - gi\|153839190\|ref\|ZP_01991857.1\| endonuclease-1 [Vibrio parahaemolyticus AQ3810], gi\|149747292\|gb\|EDM...	404.0	[0..18]	[249..4]
gi\|120557707, gi... - gi\|82743788\|ref\|ZP_00906412.1\| Deoxyribonuclease I [Shewanella sp. W3-18-1], gi\|82718859\|gb\|EAP53801... gi\|77814957, gi\|... - gi\|77814957\|ref\|ZP_00814204.1\| Deoxyribonuclease I [Shewanella putrefaciens CN-32], gi\|77810021\|gb\|E...	401.0	[0..1]	[258..1]
gi\|227008568, gi... - gi\|227080680\|ref\|YP_002809231.1\| extracellular deoxyribonuclease [Vibrio cholerae M66-2], gi\|2270085... gi\|229355853, gi... - gi\|229507108\|ref\|ZP_04396614.1\| endonuclease I precursor [Vibrio cholerae BX 330286], gi\|229355853\|g... gi\|229344413, gi... - gi\|229519724\|ref\|ZP_04409167.1\| endonuclease I precursor [Vibrio cholerae RC9], gi\|229344413\|gb\|EEO0... gi\|229606237, gi... - gi\|229606237\|ref\|YP_002876885.1\| endonuclease I precursor [Vibrio cholerae MJ-1236], gi\|229368892\|gb... DRNE_VIBCH - Extracellular deoxyribonuclease OS=Vibrio cholerae GN=dns PE=1 SV=2 gi\|125618174, gi... - gi\|75829089\|ref\|ZP_00758406.1\| COG2356: Endonuclease I [Vibrio cholerae MO10], gi\|254850702\|ref\|ZP_0... gi\|121590707, gi... - gi\|121590707\|ref\|ZP_01678039.1\| extracellular deoxyribonuclease [Vibrio cholerae 2740-80], gi\|121547... gi\|124117746, gi... - gi\|153224220\|ref\|ZP_01954303.1\| extracellular deoxyribonuclease [Vibrio cholerae MAK 757], gi\|124117... gi\|126510299, gi... - gi\|153819154\|ref\|ZP_01971821.1\| extracellular deoxyribonuclease [Vibrio cholerae NCTC 8457], gi\|1265... gi\|153823182, gi... - gi\|229509056\|ref\|ZP_04398544.1\| endonuclease I precursor [Vibrio cholerae B33], gi\|229353981\|gb\|EEO1... DRNE_VIBCH - Extracellular deoxyribonuclease OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16...	399.0	[0..7]	[247..2]
gi\|82394528 - gi\|82394528\|gb\|ABB72353.1\| endonuclease I precursor [Vibrio wodanis]	399.0	[0..13]	[247..2]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNNTSIALR SRQVLLCLFS WLAVSASANA SPSHPSSFSQ AKVLSQSLYQ GTRQGTLPAV  60
   61 SFYCGCNIEI KGKSWKPDLT SCGYQVRKQE TRANRIEWEH IVPAWEFGHQ LQCWQQGGRK 120
  121 NCADSSKEFN KMEADMHNLV PAIGEVNGDR SNFRFSQWNG KTGQYGQCEM VIDFKNRQAQ 180
  181 PPANARGKIA RTYLYMQQTY GLKIASSQLK LFKAWDKSYP VDTIECKRDN AIAQIQGNHN 240
  241 PFVQHACNAP PLRQQLAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	1ouoA
Description:	Crystal structure of the periplasmic endonuclease Vvn
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
deoxyribonuclease I activity	6.32878221233886	bayes_pls_golite062009
hydrolase activity	3.83116222475834	bayes_pls_golite062009
endodeoxyribonuclease activity, producing 5'-phosphomonoesters	3.37342567983553	bayes_pls_golite062009
deoxyribonuclease activity	2.76079360787098	bayes_pls_golite062009
endonuclease activity	2.16521397757363	bayes_pls_golite062009
endodeoxyribonuclease activity	1.9890436405178	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.81997094124327	bayes_pls_golite062009
nuclease activity	1.41172530475566	bayes_pls_golite062009
catalytic activity	1.0342182748198	bayes_pls_golite062009
binding	0.663236820712292	bayes_pls_golite062009
caspase-activated deoxyribonuclease activity	0.571337616862676	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: