| Protein: | GCSP_SHEON |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 962 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCSP_SHEON.
| Description | E-value | Query Range |
Subject Range |
|
|
793.0 | [0..5] | [961..8] |
|
|
772.0 | [0..10] | [961..29] |
|
|
768.0 | [0..15] | [961..26] |
|
|
767.0 | [0..3] | [960..64] |
|
|
765.0 | [0..1] | [962..1] |
|
|
765.0 | [0..10] | [961..24] |
|
|
763.0 | [0..1] | [962..1] |
|
|
763.0 | [0..11] | [962..20] |
|
|
763.0 | [0..1] | [962..1] |
|
|
762.0 | [0..3] | [961..21] |
|
Region A: Residues: [1-447] |
1 11 21 31 41 51
| | | | | |
1 MTKQTLTQLE QHDLFLRRHI GPDSSQQQEM LNYVGAESLD DLTAQIVPES IRLSQELSIG 60
61 DSCGEAEGIA YIRGLAKQNQ VFKSYIGMGY YGTQVPNVIL RNVLENPGWY TAYTPYQPEI 120
121 AQGRLEAILN FQQVSMDLTG LDLASASLLD EATAAAEAMA LAKRVSKAKK ANIFFVADDV 180
181 FPQTLDVVKT RAECFGFEVV VGPASEAVNH ELFGALFQYS NRFGQITDFT DLFAELRAKN 240
241 VIVTVAADIM SLVLLKSPGS MGADVVFGSA QRFGVPMGFG GPHAAFFVAR DEHKRSMPGR 300
301 IIGVSKDTRG NRALRMAMQT REQHIRREKA NSNICTAQIL LANMASFYAV FHGPQGLKTI 360
361 ASRINRFADI LAAGLQAKGV SLVNNTWFDT ISIKGLDVAA VNARALAAEM NLRFDADGIV 420
421 GVSLDETTIR TDIDALFEVI LGAGHGL
|
| Detection Method: |  |
| Confidence: | 64.39794 |
| Match: | 1wytA |
| Description: | Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| glycine dehydrogenase (decarboxylating) activity | 8.00572280567771 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | 8.00572280567771 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the CH-NH2 group of donors | 3.14486270422678 | bayes_pls_golite062009 |
| catalytic activity | 2.29878871754893 | bayes_pls_golite062009 |
| transferase activity | 1.44093490824786 | bayes_pls_golite062009 |
| transferase activity, transferring nitrogenous groups | 1.28316822767388 | bayes_pls_golite062009 |
| transaminase activity | 1.24990480711889 | bayes_pls_golite062009 |
| methyltransferase activity | 0.681623261233707 | bayes_pls_golite062009 |
| L-aspartate:2-oxoglutarate aminotransferase activity | 0.619695949258279 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 0.60304280865376 | bayes_pls_golite062009 |
| glycine hydroxymethyltransferase activity | 0.271623203801431 | bayes_pls_golite062009 |
| O-phospho-L-serine:2-oxoglutarate aminotransferase activity | 0.234399054481664 | bayes_pls_golite062009 |
| pyridoxal phosphate binding | 0.16957228630576 | bayes_pls_golite062009 |
| vitamin B6 binding | 0.16957228630576 | bayes_pls_golite062009 |
|
Region A: Residues: [448-962] |
1 11 21 31 41 51
| | | | | |
1 DVAALDAQIV AQGSQSIPAS LVREDAILSH PTFNRYQSET EMMRYIKRLE SKDLALNYSM 60
61 ISLGSCTMKL NAAVEMIPVS WPEFANMHPF CPLDQAKGYT QLIEELSSWL VNVTGYDAVC 120
121 IQPNSGAQGE YAGLLAIRKY HESRGEAHRN ICLIPQSAHG TNPASAQLAG MQVVVTACDK 180
181 QGNVDLEDLK AKAAEVAENL SCIMITYPST HGVYEETVRE ICNIVHQHGG QVYLDGANMN 240
241 AQVGLTSPGF IGADVSHLNL HKTFAIPHGG GGPGMGPIGV KAHLAPFVAG HVVVKPGRES 300
301 DNNGAVSAAP YGSAGILPIS WMYIKLLGSK GLKKSTQTAL LNANYVMKKL SEHYPVLFRG 360
361 RNDRVAHECI IDLRPIKEAS GVTEMDIAKR LNDYGFHAPT MSFPVAGTLM IEPTESESKV 420
421 ELDRFIDAMV SIRAEIAKVE AGEWPADNNP LHNAPHTMAD IMDSAFDSRP YSREVAVFPS 480
481 AAVRTNKFWP TVNRIDDVYG DRNLFCACVP LSDYE
|
| Detection Method: | |
| Confidence: | 60.221849 |
| Match: | 1wytB |
| Description: | Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| glycine dehydrogenase (decarboxylating) activity | 8.00572280567771 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | 8.00572280567771 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the CH-NH2 group of donors | 3.14486270422678 | bayes_pls_golite062009 |
| catalytic activity | 2.29878871754893 | bayes_pls_golite062009 |
| transferase activity | 1.44093490824786 | bayes_pls_golite062009 |
| transferase activity, transferring nitrogenous groups | 1.28316822767388 | bayes_pls_golite062009 |
| transaminase activity | 1.24990480711889 | bayes_pls_golite062009 |
| methyltransferase activity | 0.681623261233707 | bayes_pls_golite062009 |
| L-aspartate:2-oxoglutarate aminotransferase activity | 0.619695949258279 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 0.60304280865376 | bayes_pls_golite062009 |
| glycine hydroxymethyltransferase activity | 0.271623203801431 | bayes_pls_golite062009 |
| O-phospho-L-serine:2-oxoglutarate aminotransferase activity | 0.234399054481664 | bayes_pls_golite062009 |
| pyridoxal phosphate binding | 0.16957228630576 | bayes_pls_golite062009 |
| vitamin B6 binding | 0.16957228630576 | bayes_pls_golite062009 |
