YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372036, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372036, gi|....

Description	E-value	Query Range	Subject Range
PUR2_ECOL6 - Phosphoribosylamine--glycine ligase OS=Escherichia coli O6 GN=purD PE=3 SV=1 gi\|218561071, gi... - gi\|218561071\|ref\|YP_002393984.1\| phosphoribosylamine--glycine ligase [Escherichia coli S88], gi\|2183... gi\|227837538, gi... - gi\|227885464\|ref\|ZP_04003269.1\| phosphoribosylamine--glycine ligase [Escherichia coli 83972], gi\|227... gi\|237702772, gi... - gi\|237702772\|ref\|ZP_04533253.1\| phosphoribosylamine-glycine ligase [Escherichia sp. 3_2_53FAA], gi\|2... PUR2_ECOL6 - Phosphoribosylamine--glycine ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) G... gi\|117626267, gi... - gi\|117626267\|ref\|YP_859590.1\| phosphoribosylamine--glycine ligase [Escherichia coli APEC O1], gi\|115... gi\|91074363, gi\|... - gi\|91212789\|ref\|YP_542775.1\| phosphoribosylamine--glycine ligase [Escherichia coli UTI89], gi\|910743...	401.0	[0..1]	[431..1]
gi\|251787263, gi... - gi\|251787263\|ref\|YP_003001567.1\| hypothetical protein B21_03835 [Escherichia coli BL21], gi\|24237953... gi\|253975848, gi... - gi\|254163947\|ref\|YP_003047055.1\| phosphoribosylamine-glycine ligase [Escherichia coli B str. REL606]... gi\|254290697, gi... - gi\|254290697\|ref\|YP_003056445.1\| phosphoribosylamine-glycine ligase [Escherichia coli BL21(DE3)], gi... gi\|194439792, gi... - gi\|83584835\|ref\|ZP_00923495.1\| COG0151: Phosphoribosylamine-glycine ligase [Escherichia coli 101-1],...	400.0	[0..1]	[431..1]
gi\|75238546 - gi\|75238546\|ref\|ZP_00722535.1\| COG0151: Phosphoribosylamine-glycine ligase [Escherichia coli E110019...	400.0	[0..1]	[431..5]
gi\|157069154, gi... - gi\|75197869\|ref\|ZP_00707939.1\| COG0151: Phosphoribosylamine-glycine ligase [Escherichia coli HS], gi...	400.0	[0..1]	[431..1]
gi\|170021992, gi... - gi\|170021992\|ref\|YP_001726946.1\| phosphoribosylamine--glycine ligase [Escherichia coli ATCC 8739], g... gi\|124531390, gi... - gi\|124531390\|ref\|ZP_01701700.1\| phosphoribosylamine--glycine ligase [Escherichia coli B], gi\|1244986... gi\|75228124, gi\|... - gi\|75228124\|ref\|ZP_00714793.1\| COG0151: Phosphoribosylamine-glycine ligase [Escherichia coli B7A], g... gi\|75188735, gi\|... - gi\|75188735\|ref\|ZP_00702002.1\| COG0151: Phosphoribosylamine-glycine ligase [Escherichia coli E24377A...	400.0	[0..1]	[431..1]
gi\|209921485, gi... - gi\|209921485\|ref\|YP_002295569.1\| phosphoribosylamine--glycine ligase [Escherichia coli SE11], gi\|209... gi\|75255502, gi\|... - gi\|75255502\|ref\|ZP_00727301.1\| COG0151: Phosphoribosylamine-glycine ligase [Escherichia coli E22], g... gi\|218556560, gi... - gi\|218556560\|ref\|YP_002389474.1\| phosphoribosylamine--glycine ligase [Escherichia coli IAI1], gi\|218... gi\|194429955, gi... - gi\|75208803\|ref\|ZP_00709089.1\| COG0151: Phosphoribosylamine-glycine ligase [Escherichia coli B171], ...	399.0	[0..1]	[431..1]
gi\|254796003, gi... - gi\|254796003\|ref\|YP_003080840.1\| phosphoribosylamine-glycine ligase [Escherichia coli O157:H7 str. T... gi\|208821233, gi... - gi\|208821233\|ref\|ZP_03261553.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. E... gi\|208813417, gi... - gi\|208813417\|ref\|ZP_03254746.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. E... gi\|217325861, gi... - gi\|217325861\|ref\|ZP_03441945.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. T... gi\|209158246, gi... - gi\|209396846\|ref\|YP_002273522.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. ... gi\|189379173, gi... - gi\|189379173\|gb\|EDU97589.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. EC508... gi\|189370161, gi... - gi\|189370161\|gb\|EDU88577.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. EC869... gi\|208806688, gi... - gi\|208806688\|ref\|ZP_03249025.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. E... gi\|195939631 - gi\|195939631\|ref\|ZP_03085013.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. E... gi\|189359748, gi... - gi\|189359748\|gb\|EDU78167.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. EC448... gi\|189365461, gi... - gi\|189365461\|gb\|EDU83877.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. EC450... gi\|168780391, gi... - gi\|189001791\|gb\|EDU70777.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. EC407... gi\|168777381, gi... - gi\|187767359\|gb\|EDU31203.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. EC419... gi\|15834182, gi\|... - gi\|15834182\|ref\|NP_312955.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. Saka... gi\|168758598, gi... - gi\|189354601\|gb\|EDU73020.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. EC440... PUR2_ECO57 - Phosphoribosylamine--glycine ligase OS=Escherichia coli O157:H7 GN=purD PE=3 SV=1 gi\|168752029, gi... - gi\|188014033\|gb\|EDU52155.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 str. EC411... gi\|12518937, gi\|... - gi\|15804596\|ref\|NP_290637.1\| phosphoribosylamine--glycine ligase [Escherichia coli O157:H7 EDL933], ... gi\|209751628, gi... - pir\|\|F86092 phosphoribosylglycinamide synthetase [imported] - Escherichia coli (strain O157:H7, subs...	399.0	[0..1]	[431..1]
gi\|74314499, gi\|... - gi\|74314499\|ref\|YP_312918.1\| phosphoribosylamine--glycine ligase [Shigella sonnei Ss046], gi\|7385797...	398.0	[0..1]	[431..1]
gi\|82778819, gi\|... - gi\|82778819\|ref\|YP_405168.1\| phosphoribosylamine--glycine ligase [Shigella dysenteriae Sd197], gi\|81...	398.0	[0..1]	[431..1]
gi\|75236735, gi\|... - gi\|75236735\|ref\|ZP_00720808.1\| COG0151: Phosphoribosylamine-glycine ligase [Escherichia coli F11], g... gi\|218429850, gi... - gi\|218692286\|ref\|YP_002400498.1\| phosphoribosylamine--glycine ligase [Escherichia coli ED1a], gi\|218... gi\|110644340, gi... - gi\|110644340\|ref\|YP_672070.1\| phosphoribosylamine--glycine ligase [Escherichia coli 536], gi\|1103459...	397.0	[0..1]	[431..1]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLVIGGGG REHALAWKAA QSAQVDTVYV APGNAGTALE PNIENVDISA TDIPALIDFA  60
   61 KINQIELTIV GPEAPLVLGV VDAFNAAGLP IFGPTKAAAQ LEGSKAFTKD FLARHNIPTA 120
  121 GYKNCTEISD AKAFVRELTA TTGYPVVIKA DGLAAGKGVI IAQDQAEADA AIDDMLAGNK 180
  181 FGDAGSRVVI EEFLKGEEAS FIVMVDGKNI LAMATSQDHK ARDNADHGPN TGGMGAYSPA 240
  241 PVVTQSVHDW TIANVIRPTV DGMAAEGNVY TGFLYAGLMI APDGSAKVLE YNCRFGDPET 300
  301 QPIMMRLKSD LVELCLAATR GELDKVTAEY DERAAVGVVL AAGGYPDEYR KGDVIDGLSL 360
  361 GNHDAKVFHA GTEMKGGHVV TNGGRVLCAT ALGNTVTEAQ KAAYQLVDEI HWDDVYFRTD 420
  421 IGYRAIAREQ QG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	1gsoA
Description:	Glycinamide ribonucleotide synthetase (GAR-syn), C-domain; Glycinamide ribonucleotide synthetase (GAR-syn), N-domain; Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-nitrogen bonds	2.70117427678868	bayes_pls_golite062009
catalytic activity	2.5009559386228	bayes_pls_golite062009
ligase activity	2.47642734831155	bayes_pls_golite062009
carbamoyl-phosphate synthase activity	2.44033380004582	bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	2.37684773430084	bayes_pls_golite062009
phosphoribosylaminoimidazole carboxylase activity	1.50894988737279	bayes_pls_golite062009
phosphoribosylamine-glycine ligase activity	1.37477732460326	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.11645327303429	bayes_pls_golite062009
binding	0.775987463779474	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.351267830197198	bayes_pls_golite062009
CoA carboxylase activity	0.0110559959379195	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: