YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372019, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	888 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372019, gi|....

Description	E-value	Query Range	Subject Range
gi\|78361821, gi\|... - gi\|78366233\|ref\|ZP_00836515.1\| 2-oxo-acid dehydrogenase E1 component homodimeric type [Shewanella sp...	845.0	[0..1]	[888..1]
gi\|160877158, gi... - gi\|160877158\|ref\|YP_001556474.1\| pyruvate dehydrogenase subunit E1 [Shewanella baltica OS195], gi\|16... gi\|151367056, gi... - gi\|153002438\|ref\|YP_001368119.1\| pyruvate dehydrogenase subunit E1 [Shewanella baltica OS185], gi\|15...	845.0	[0..1]	[888..1]
gi\|68543115, gi\|... - gi\|68543115\|ref\|ZP_00582830.1\| 2-oxo-acid dehydrogenase E1 component homodimeric type [Shewanella ba...	844.0	[0..1]	[888..17]
gi\|82742203, gi\|... - gi\|82742203\|ref\|ZP_00904903.1\| 2-oxo-acid dehydrogenase E1 component homodimeric type [Shewanella sp...	844.0	[0..1]	[888..17]
gi\|120597357, gi... - gi\|120597357\|ref\|YP_961931.1\| pyruvate dehydrogenase subunit E1 [Shewanella sp. W3-18-1], gi\|1205574... gi\|124546339, gi... - gi\|124546339\|ref\|ZP_01705435.1\| 2-oxo-acid dehydrogenase E1 subunit, homodimeric type [Shewanella pu... gi\|145566192, gi... - gi\|77813921\|ref\|ZP_00813192.1\| 2-oxo-acid dehydrogenase E1 component homodimeric type [Shewanella pu...	843.0	[0..1]	[888..1]
gi\|114049086, gi... - gi\|78690759\|ref\|ZP_00855398.1\| 2-oxo-acid dehydrogenase E1 component homodimeric type [Shewanella sp... gi\|113968772, gi... - gi\|82497173\|ref\|ZP_00882731.1\| 2-oxo-acid dehydrogenase E1 component homodimeric type [Shewanella sp...	843.0	[0..1]	[888..1]
gi\|78504203, gi\|... - gi\|78688056\|ref\|ZP_00852781.1\| 2-oxo-acid dehydrogenase E1 component homodimeric type [Shewanella sp...	842.0	[0..1]	[888..1]
gi\|69953979, gi\|... - gi\|69953979\|ref\|ZP_00640861.1\| 2-oxo-acid dehydrogenase E1 component homodimeric type [Shewanella fr... gi\|149675705 - gi\|149675705\|dbj\|BAF64732.1\| dihydrolipoamide acyltransferase [Shewanella livingstonensis]	836.0	[0..1]	[888..1]
gi\|56459569, gi\|... - gi\|56459569\|ref\|YP_154850.1\| pyruvate dehydrogenase subunit E1 [Idiomarina loihiensis L2TR], gi\|5617...	821.0	[0..1]	[888..1]
gi\|54310284, gi\|... - gi\|54310284\|ref\|YP_131304.1\| pyruvate dehydrogenase subunit E1 [Photobacterium profundum SS9], gi\|46...	817.0	[0..1]	[888..1]

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Predicted Domain #1

Region A:
Residues: [1-888]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDMLQDVD PLETQEWVDA LQAVLEQEGP ERAHFLLEKL IDKARRNGTH LPYNATTAYL  60
   61 NTIPAGQEPH MPGNQEMERR IRAIIRWNAL AMVLRGSKKD LELGGHISSF ASSATIYDVC 120
  121 FNHFFRGPNE KDGGDLVYFQ GHIAPGIYAR SFLEGRLSED QLANFRQEVD GKGLSSYPHP 180
  181 KLMPDYWQFP TVSMGLGPIQ AIYQARFLKY LTDRGLKDCS AQTVYCFLGD GECDEPEALG 240
  241 AIGLAAREEL DNLVFIVNCN LQRLDGPVRG NGKIIQELEG EFRGAGWEVV KVIWGRYWDP 300
  301 LLARDTSGKL LQLMEETVDG EYQNCKAKGG AYTREHFFGK YPETAEMVAN MSDDDIWRLN 360
  361 RGGHDPVKVY AALDHAQKTK GRPTVILAKT VKGYGLGDAG EGKNIAHNVK KMGIESIRYF 420
  421 RDRFNIPIPD DQLEDLPFYH PGPDSEEVKY MMSRRAALHG SVPQRREKFS EELEVPSLKI 480
  481 FDSILQGSNG REISSTMAFV RVLTALLKDK KIGKNIVPII PDEARTFGME GLFRQVGIYA 540
  541 HEGQKYVPQD SDQVAYYRED KTGQVLQEGI NELGAMSSWV AAATSYSVND TPMIPFYIYY 600
  601 SMFGFQRIGD MAWAAGDMRA RGFLVGGTSG RTTLNGEGLQ HQDGHSHVLA NTIPNCITYD 660
  661 PTYGYEIAVV VQDGIRRMYG EKQEDIFYYL TTMNENYIQP EMPEGAEEGI VKGIYKLETV 720
  721 SGSGKGKVQL LSCGTILEQT RKAAQALAKD FGITADVFSV TSFNELTRDG QAVERWNMLH 780
  781 PTQTPKQAYI SQVISSDAPA IAATDYMKIY GEQLRAFMPT DYKVLGTDGF GRSDSRDNLR 840
  841 HHFEVDAKFI VIAALKSLVD RKELPVDVLA NAIKEYGIDA DKINPQYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qtaA
Description:	No description for 2qtaA was found.

Predicted functions:

Term	Confidence	Notes
pyruvate dehydrogenase activity	11.3856674722026	bayes_pls_golite062009
pyruvate dehydrogenase (acetyl-transferring) activity	11.0549577473177	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	10.8180381281695	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	4.89064211833637	bayes_pls_golite062009
catalytic activity	2.25537597692103	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	2.23839303410623	bayes_pls_golite062009
acetolactate synthase activity	1.59303412812463	bayes_pls_golite062009
transketolase activity	1.53492491341322	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.723020204729919	bayes_pls_golite062009
oxidoreductase activity	0.459800433209317	bayes_pls_golite062009
transferase activity	0.413024577830522	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: