| Protein: | AP18A_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 637 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP18A_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..637] | [1..637] |
|
|
0.0 | [2..627] | [20..651] |
|
|
0.0 | [2..627] | [20..636] |
|
|
0.0 | [3..604] | [31..611] |
|
|
0.0 | [2..512] | [35..539] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MTTYFKLVKG ATKIKSAPPK QKYLDPILLG TSNEEDFYEI VKGLDSRIND TAWTIVYKSL 60
61 LVVHLMIREG SKDVALRYYS RNLEFFDIEN IRGSNGSASG DMRALDRYDN YLKVRCREFG 120
121 KI
|
|
Region B: Residues: [167-192] |
1 11 21 31 41 51
| | | | | |
1 ALIKNKYTQY DLSNELIIFG FKLLIQ
|
| Detection Method: |  |
| Confidence: | 298.519517 |
| Match: | 1hf8A_ |
| Description: | Clathrin assembly lymphoid myeloid leukaemia protein, Calm |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 2.70535896247543 | bayes_pls_golite062009 |
| binding | 2.34501465852339 | bayes_pls_golite062009 |
| protein binding | 1.7891964555817 | bayes_pls_golite062009 |
| phosphatidylinositol-4,5-bisphosphate binding | 1.20269437433936 | bayes_pls_golite062009 |
| phosphoinositide binding | 0.87586037360588 | bayes_pls_golite062009 |
| phospholipid binding | 0.84481265656013 | bayes_pls_golite062009 |
| lipid binding | 0.176990783274449 | bayes_pls_golite062009 |
|
Region A: Residues: [123-166] |
1 11 21 31 41 51
| | | | | |
1 KKDYVRDGYR TLKLNSGNYG SSRNKQHSIN IALDHVESLE VQIQ
|
|
Region B: Residues: [193-271] |
1 11 21 31 41 51
| | | | | |
1 DLLALYNALN EGIITLLESF FELSHHNAER TLDLYKTFVD LTEHVVRYLK SGKTAGLKIP 60
61 VIKHITTKLV RSLEEHLIE
|
| Detection Method: | |
| Confidence: | 298.519517 |
| Match: | 1hf8A_ |
| Description: | Clathrin assembly lymphoid myeloid leukaemia protein, Calm |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [272-338] |
1 11 21 31 41 51
| | | | | |
1 DDKTHNTFVP VDSSQGSAGA VVAKSTAQER LEQIREQKRI LEAQLKNEQV AISPALTTVT 60
61 AAQSYNP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.332 | 0.921 | clathrin binding | a.39.1 | EF-hand |
|
Region A: Residues: [339-637] |
1 11 21 31 41 51
| | | | | |
1 FGTDSSMHTN IPMAVANQTQ QIANNPFVSQ TQPQVMNTPT AHTEPANLNV PEYAAVQHTV 60
61 NFNPVQDAGV SAQQTGYYSI NNHLTPTFTG AGFGGYSVSQ DTTAASNQQV SHSQTGSNNP 120
121 FALHNAATIA TGNPAHENVL NNPFSRPNFD EQNTNMPLQQ QIISNPFQNQ TYNQQQFQQQ 180
181 KMPLSSINSV MTTPTSMQGS MNIPQRFDKM EFQAHYTQNH LQQQQQQQQQ QQQQQQQQPQ 240
241 QGYYVPATAG ANPVTNITGT VQPQNFPFYP QQQPQPEQSQ TQQPVLGNQY ANNLNLIDM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
