YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47016802, gi\|...
Organism:	Listeria monocytogenes serotype 1/2a str. F6854
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47016802, gi|....

Description	E-value	Query Range	Subject Range
gi\|133727747, gi... - gi\|153166231\|ref\|ZP_01926850.1\| hypothetical protein LMHG_00097 [Listeria monocytogenes FSL N1-017],... gi\|254852407 - gi\|254852407\|ref\|ZP_05241755.1\| formate/nitrite transporter family protein [Listeria monocytogenes F... gi\|254823817 - gi\|254823817\|ref\|ZP_05228818.1\| formate/nitrite transporter family protein [Listeria monocytogenes F... gi\|153201615, gi... - gi\|254931297\|ref\|ZP_05264656.1\| formate/nitrite transporter family protein [Listeria monocytogenes H... gi\|46880414, gi\|... - gi\|46907147\|ref\|YP_013536.1\| formate/nitrite transporter family protein [Listeria monocytogenes str.... gi\|254878315 - gi\|254878315\|ref\|ZP_05251025.1\| formate/nitrite transporter family protein [Listeria monocytogenes F...	310.0	[0..1]	[270..1]
gi\|47019562, gi\|... - gi\|47092122\|ref\|ZP_00229915.1\| formate/nitrite transporter family protein [Listeria monocytogenes st... gi\|254993893 - gi\|254993893\|ref\|ZP_05276083.1\| formate/nitrite transporter family protein [Listeria monocytogenes F...	310.0	[0..1]	[270..1]
gi\|51975232, gi\|... - gi\|52141763\|ref\|YP_085067.1\| formate transporter [Bacillus cereus E33L], gi\|51975232\|gb\|AAU16782.1\| ... gi\|229092761, gi... - gi\|229092761\|ref\|ZP_04223899.1\| Uncharacterized transporter [Bacillus cereus Rock3-42], gi\|228690559...	278.0	[0..1]	[266..1]
gi\|228947390, gi... - gi\|228947390\|ref\|ZP_04109681.1\| Uncharacterized transporter [Bacillus thuringiensis serovar monterre... gi\|228824595, gi... - gi\|228935025\|ref\|ZP_04097855.1\| Uncharacterized transporter [Bacillus thuringiensis serovar andalous... gi\|228830860, gi... - gi\|228928775\|ref\|ZP_04091809.1\| Uncharacterized transporter [Bacillus thuringiensis serovar pondiche... gi\|227813372, gi... - gi\|227813372\|ref\|YP_002813381.1\| putative formate transporter [Bacillus anthracis str. CDC 684], gi\|... gi\|30258374, gi\|... - gi\|30263730\|ref\|NP_846107.1\| formate transporter, putative [Bacillus anthracis str. Ames], gi\|302583... gi\|167512180, gi... - gi\|167639779\|ref\|ZP_02398048.1\| putative formate transporter [Bacillus anthracis str. A0193], gi\|167... gi\|65321053, gi\|... - gi\|65321053\|ref\|ZP_00394012.1\| COG2116: Formate/nitrite family of transporters [Bacillus anthracis s... gi\|170706851, gi... - gi\|170706851\|ref\|ZP_02897309.1\| putative formate transporter [Bacillus anthracis str. A0389], gi\|170... gi\|172082450, gi... - gi\|177652081\|ref\|ZP_02934627.1\| putative formate transporter [Bacillus anthracis str. A0174], gi\|172... gi\|195993213, gi... - gi\|196034139\|ref\|ZP_03101549.1\| putative formate transporter [Bacillus cereus W], gi\|195993213\|gb\|ED... gi\|196030649, gi... - gi\|196038241\|ref\|ZP_03105550.1\| putative formate transporter [Bacillus cereus NVH0597-99], gi\|196030... gi\|218904855, gi... - gi\|218904855\|ref\|YP_002452689.1\| putative formate transporter [Bacillus cereus AH820], gi\|218538191\|... gi\|49186574, gi\|... - gi\|49186574\|ref\|YP_029826.1\| formate transporter, putative [Bacillus anthracis str. Sterne], gi\|4918... gi\|118478948, gi... - gi\|118478948\|ref\|YP_896099.1\| formate transporter [Bacillus thuringiensis str. Al Hakam], gi\|1184181... gi\|47529145, gi\|... - gi\|47529145\|ref\|YP_020494.1\| formate transporter, putative [Bacillus anthracis str. 'Ames Ancestor']... gi\|165872791, gi... - gi\|165872791\|ref\|ZP_02217418.1\| putative formate transporter [Bacillus anthracis str. A0488], gi\|164... gi\|254759424 - gi\|254759424\|ref\|ZP_05211449.1\| putative formate transporter [Bacillus anthracis str. Australia 94] gi\|254751107 - gi\|254751107\|ref\|ZP_05203146.1\| putative formate transporter [Bacillus anthracis str. Vollum] gi\|254735763 - gi\|254735763\|ref\|ZP_05193469.1\| putative formate transporter [Bacillus anthracis str. Western North ... gi\|254721153 - gi\|254721153\|ref\|ZP_05182944.1\| putative formate transporter [Bacillus anthracis str. A1055] gi\|254683565 - gi\|254683565\|ref\|ZP_05147425.1\| putative formate transporter [Bacillus anthracis str. CNEVA-9066] gi\|229267086, gi... - gi\|229602678\|ref\|YP_002867966.1\| putative formate transporter [Bacillus anthracis str. A0248], gi\|22... gi\|229185955, gi... - gi\|229185955\|ref\|ZP_04313126.1\| Uncharacterized transporter [Bacillus cereus BGSC 6E1], gi\|228597507... gi\|228660019, gi... - gi\|229123243\|ref\|ZP_04252447.1\| Uncharacterized transporter [Bacillus cereus 95/8201], gi\|228660019\|...	277.0	[0..1]	[266..1]
gi\|49329901, gi\|... - gi\|49478345\|ref\|YP_037792.1\| formate transporter [Bacillus thuringiensis serovar konkukian str. 97-2...	277.0	[0..1]	[266..1]
gi\|23471508, gi\|... - gi\|66047884\|ref\|YP_237725.1\| formate/nitrite transporter [Pseudomonas syringae pv. syringae B728a], ...	276.0	[0..1]	[260..1]
gi\|52784762, gi\|... - gi\|52784762\|ref\|YP_090591.1\| YrhG [Bacillus licheniformis ATCC 14580], gi\|52347264\|gb\|AAU39898.1\| Yr...	275.0	[0..1]	[262..1]
gi\|42782805, gi\|... - gi\|42782805\|ref\|NP_980052.1\| formate transporter, putative [Bacillus cereus ATCC 10987], gi\|42738732...	273.0	[0..1]	[266..1]
gi\|89152749, gi\|... - gi\|89209321\|ref\|ZP_01187757.1\| Formate/nitrite transporter [Bacillus weihenstephanensis KBAB4], gi\|8... gi\|228614868, gi... - gi\|229168462\|ref\|ZP_04296185.1\| Uncharacterized transporter [Bacillus cereus AH621], gi\|228614868\|gb...	273.0	[0..1]	[266..1]
gi\|47569252, gi\|... - gi\|47569252\|ref\|ZP_00239938.1\| formate/nitrite transporter family protein [Bacillus cereus G9241], g...	273.0	[0..1]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYYSPQEVT EITIEKGTQK ANSSTLTLVL LGFLGGAFIS LGYLLYIRAV GTMPHEWGSF  60
   61 ATLIGASLFP VGLVCILLGG GELITGNMMA VAIAWYDKKI SFQQLLRNWA IVSVMNLVGA 120
  121 FFVAYFFGHF VGLTEGDFLP KTLATAGAKI NDPFWVAFVS GIGCNWFVGI AVWLCYAAKD 180
  181 FAGKILGIWF PVMAFVAIGF QHVVANMFII PAAIFAGYYS WADFIWNVIP VYLGNVVGGA 240
  241 VFVSLFYFLA YKKNAPKKVK EEIHQPIEEN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.63
Match:	1fx8A
Description:	Glycerol uptake facilitator protein GlpF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	3.29716739878922	bayes_pls_golite062009
substrate-specific channel activity	2.94662039655367	bayes_pls_golite062009
channel activity	2.9414344431192	bayes_pls_golite062009
passive transmembrane transporter activity	2.9414344431192	bayes_pls_golite062009
transmembrane transporter activity	2.89191055188639	bayes_pls_golite062009
substrate-specific transporter activity	2.82037090563528	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.65037422078415	bayes_pls_golite062009
nitrate transmembrane transporter activity	1.47913191081789	bayes_pls_golite062009
water transmembrane transporter activity	1.45822447350992	bayes_pls_golite062009
water channel activity	1.30496704143853	bayes_pls_golite062009
anion transmembrane transporter activity	0.909897861102259	bayes_pls_golite062009
ion transmembrane transporter activity	0.843641784538908	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.665829718813242	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.641796590324282	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	0.619845435332912	bayes_pls_golite062009
amine transmembrane transporter activity	0.232492592199022	bayes_pls_golite062009
cation transmembrane transporter activity	0.156116095173723	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: