| Protein: | CCDS9019.1_1 |
| Organism: | Chlorocebus aethiops |
| Length: | 242 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS9019.1_1.
| Description | E-value | Query Range |
Subject Range |
|
|
9.0E-60 | [1..242] | [1..242] |
|
|
2.0E-58 | [1..242] | [1..242] |
|
|
2.0E-57 | [1..242] | [1..242] |
|
|
6.0E-57 | [1..242] | [1..242] |
|
|
1.0E-56 | [1..242] | [1..242] |
|
|
1.0E-49 | [1..242] | [1..242] |
|
|
4.0E-46 | [3..233] | [1..244] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MMMDLFETGS YFFYLDGENV TLQPLEVAEG SPLYPGSDGT LSPCQDQMPP EAGSDSSGEE 60
61 HVLAPPGLQP PHCPGQCLIW ACKTCKR
|
| Detection Method: |  |
| Confidence: | 37.040959 |
| Match: | PF01586.7 |
| Description: | No description for PF01586.7 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [88-157] |
1 11 21 31 41 51
| | | | | |
1 KSAPTDRRKA ATLRERRRLK KINEAFEALK RRTVANPNQR LPKVEILRSA ISYIERLQDL 60
61 LHRLDQQEKM
|
| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 1mdyA |
| Description: | Myod B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| transcription activator activity | 3.87875547821718 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.42035985454056 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.39500382187264 | bayes_pls_golite062009 |
| protein binding | 2.64975291677725 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| transcription repressor activity | 2.58751248599889 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 2.42306484786159 | bayes_pls_golite062009 |
| transcription corepressor activity | 2.03674713048499 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| promoter binding | 0.8576109846276 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.53175615551166 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
| protein dimerization activity | 0.20674648626116 | bayes_pls_golite062009 |
|
Region A: Residues: [158-242] |
1 11 21 31 41 51
| | | | | |
1 QELGVDPFSY RPKQENLEGA DFLRTCSSQW PSVSDHSRGL VITAKEGGAS IDSSASSSLR 60
61 CLSSIVDSIS SEERKLPCVE EVVEK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.393 | 0.445 | negative regulation of transcription | a.39.1 | EF-hand |
| View | Download | 0.419 | 0.379 | positive regulation of transcription | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.310 | 0.006 | transcription factor activity | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.387 | 0.003 | negative regulation of transcription | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.325 | N/A | N/A | a.39.1 | EF-hand |
