| Protein: | YFF4_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 646 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFF4_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..646] | [1..646] |
|
|
0.0 | [97..615] | [61..578] |
|
|
1.0E-96 | [305..591] | [1..282] |
|
|
6.0E-96 | [305..591] | [1..280] |
|
|
7.0E-96 | [305..591] | [1..279] |
|
|
8.0E-96 | [305..591] | [1..282] |
|
|
9.0E-96 | [305..591] | [1..282] |
|
|
1.0E-95 | [305..591] | [1..279] |
|
Region A: Residues: [1-236] |
1 11 21 31 41 51
| | | | | |
1 MSYESGRSSS SSESTRPPTL KEEPNGKIAW EESVKKSREN NENDSTLLRR KLGETRKAIE 60
61 TGGSSRNKLS ALTPLKKVVD ERKDSVQPQV PSMGFTYSLP NLKTLNSFSD AEQARIMQDY 120
121 LSRGVNQGNS NNYVDPLYRQ LNPTMGSSRN RPVWSLNQPL PHVLDRGLAA KMIQKNMDAR 180
181 SRASSRRGST DISRGGSTTS VKDWKRLLRG AAPGKKLGDI EAQTQRDNTV GADVKP
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [237-326] |
1 11 21 31 41 51
| | | | | |
1 TKLEPENPQK PSNTHIENVS RKKKRTSHNV NFSLGDESYA SSIADAESRK LKNMQTLDGS 60
61 TPVYTKLPEE LIEEENKSTS ALDGNEIGAS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.560 | a.77.1 | DEATH domain |
| View | Download | 0.384 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.557 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.498 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.384 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.383 | a.77.1 | DEATH domain |
| View | Download | 0.381 | c.9.1 | Barstar (barnase inhibitor) |
| View | Download | 0.369 | a.134.1 | Fungal elicitin |
| View | Download | 0.361 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.351 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.320 | a.47.2 | t-snare proteins |
| View | Download | 0.312 | a.77.1 | DEATH domain |
| View | Download | 0.311 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.287 | a.4.1 | Homeodomain-like |
| View | Download | 0.251 | a.28.1 | ACP-like |
| View | Download | 0.237 | a.158.1 | F-box domain |
| View | Download | 0.234 | a.64.1 | Saposin |
| View | Download | 0.204 | a.141.1 | Frizzled cystein-rich domain |
|
Region A: Residues: [327-460] |
1 11 21 31 41 51
| | | | | |
1 EDEDADIMTF PNFWAKIRYH MREPFAEFLG TLVLVIFGVG GNLQATVTKG SGGSYESLSF 60
61 AWGFGCMLGV YVAGGISGGH INPAVTISMA IFRKFPWKKV PVYIVAQIIG AYFGGAMAYG 120
121 YFWSSITEFE GGPH
|
| Detection Method: | |
| Confidence: | 496.70927 |
| Match: | 1fx8A_ |
| Description: | Glycerol uptake facilitator protein GlpF |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| water transmembrane transporter activity | 10.0147296433934 | bayes_pls_golite062009 |
| water channel activity | 9.90182460707078 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 6.84984722645819 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 6.65010837320829 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 6.65010837320829 | bayes_pls_golite062009 |
| transporter activity | 5.23077472964938 | bayes_pls_golite062009 |
| substrate-specific channel activity | 5.0695479460357 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 5.06520190871345 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 5.06054430984045 | bayes_pls_golite062009 |
| channel activity | 5.06054430984045 | bayes_pls_golite062009 |
| transmembrane transporter activity | 4.83314424546299 | bayes_pls_golite062009 |
| glycerol channel activity | 4.20153412116491 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.82456291801633 | bayes_pls_golite062009 |
| pyrimidine transmembrane transporter activity | 2.16047489562591 | bayes_pls_golite062009 |
| purine transmembrane transporter activity | 1.87440278697248 | bayes_pls_golite062009 |
| nucleobase transmembrane transporter activity | 1.87440278697248 | bayes_pls_golite062009 |
| binding | 0.629257163572322 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.516648340085278 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.315342449421593 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.141210715822635 | bayes_pls_golite062009 |
| urea channel activity | 0.104970224967194 | bayes_pls_golite062009 |
| urea transmembrane transporter activity | 0.104970224967194 | bayes_pls_golite062009 |
| amide transmembrane transporter activity | 0.104970224967194 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 0.0368961725897963 | bayes_pls_golite062009 |
|
Region A: Residues: [461-646] |
1 11 21 31 41 51
| | | | | |
1 IRTTATGACL FTDPKSYVTW RNAFFDEFIG ASILVGCLMA LLDDSNAPPG NGMTALIIGF 60
61 LVAAIGMALG YQTSFTINPA RDLGPRIFAS MIGYGPHAFH LTHWWWTWGA WGGPIAGGIA 120
121 GALIYDIFIF TGCESPVNYP DNGYIENRVG KLLHAEFHQN DGTVSDESGV NSNSNTGSKK 180
181 SVPTSS
|
| Detection Method: | |
| Confidence: | 496.70927 |
| Match: | 1fx8A_ |
| Description: | Glycerol uptake facilitator protein GlpF |
| Matching Structure (courtesy of the PDB): |
|
