| Protein: | SYDC1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 532 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYDC1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
479.0 | [0..12] | [532..14] |
|
Region A: Residues: [1-532] |
1 11 21 31 41 51
| | | | | |
1 MVGSEVLEEC GEKISKKESK KRAAKLEKLL RKQEREEATS SSLSLEEEDE SCSSNYGDVT 60
61 TNELQSAVEG KELTDVSNLV EEIVGSEVSI RGRLHKNRLV GTKLFVILRE SGFTVQCVVE 120
121 ETRVGANMIK FVKQLSRESV VELIGVVSHP KKPLTGTTQQ VEIHVRKMYC LSRSLPNLPL 180
181 VVEDAARSES DIEKSGKDGK QAARVLQDTR LNNRVLDIRT PANQAIFRIQ CQVQIAFREY 240
241 LQSKGFLEIH TPKLIAGSSE GGSAVFRLDY KGQPACLAQS PQLHKQMAIC GDMRRVFEVG 300
301 PVFRAEDSFT HRHLCEFVGL DVEMEIRMHY SEIMDLVGEL FPFIFTKIEE RCPKELESVR 360
361 KQYPFQSLKF LPQTLRLTFA EGIQMLKEAG EEVDPLGDLN TESERKLGQL VLEKYKTEFY 420
421 MLHRYPSAVR PFYTMPYEND SNYSNSFDVF IRGEEIMSGA QRIHDPELLE KRARECGIDV 480
481 KTISTYIDAF RYGAPPHGGF GVGLERVVML LCALNNIRKT SLFPRDSQRL TP
|
| Detection Method: |  |
| Confidence: | 116.0 |
| Match: | 1asyA |
| Description: | Aspartyl-tRNA synthetase (AspRS) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| lysine-tRNA ligase activity | 11.0047124677093 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 7.89468709683036 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 7.89468709683036 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 7.88410036819636 | bayes_pls_golite062009 |
| ligase activity | 6.92073480193262 | bayes_pls_golite062009 |
| asparagine-tRNA ligase activity | 5.29805946490109 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 3.80084837437429 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 3.4145644216516 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.90150581291897 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 2.61548498770105 | bayes_pls_golite062009 |
| structural molecule activity | 2.54582212334303 | bayes_pls_golite062009 |
| proline-tRNA ligase activity | 2.52223115725965 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 2.18642354927 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 2.07594942154162 | bayes_pls_golite062009 |
| catalytic activity | 1.99372273395202 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 1.82594054955281 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 1.72215103383322 | bayes_pls_golite062009 |
| translation initiation factor activity | 1.27539679024898 | bayes_pls_golite062009 |
| binding | 0.966824335333342 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.56590887755068 | bayes_pls_golite062009 |
| ribonuclease activity | 0.506819168662173 | bayes_pls_golite062009 |
| transcription regulator activity | 0.375542987753806 | bayes_pls_golite062009 |
| nuclease activity | 0.29926900436997 | bayes_pls_golite062009 |
| nucleic acid binding | 0.281662799812287 | bayes_pls_golite062009 |
| DNA binding | 0.0309732052586011 | bayes_pls_golite062009 |
