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View Structure Prediction Details

Protein: KAD5_ARATH
Organism: Arabidopsis thaliana
Length: 588 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KAD5_ARATH.

Description E-value Query
Range		 Subject
Range
gi|79329010 - gi|79329010|ref|NP_001031966.1| adenylate kinase family protein [Arabidopsis thaliana]
 487.0 [0..34] [580..34]

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Predicted Domain #1
Region A:
Residues: [1-79] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSLSSAH FSSTSSSSRS SISTSSLSPS STSLPLLQSP IRRRYRSLRR RLSFSVIPRR  60
   61 TSRSFSTSNS QIRCSINEP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 1j8mF
Description: Signal sequence recognition protein Ffh; GTPase domain of the signal sequence recognition protein Ffh
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [80-298] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKVMISGAPA SGKGTQCELI VHKFGLVHIS TGDLLRAEVS SGTDIGKRAK EFMNSGSLVP  60
   61 DEIVIAMVAG RLSREDAKEH GWLLDGFPRS FAQAQSLDKL NVKPDIFILL DVPDEILIDR 120
  121 CVGRRLDPVT GKIYHIKNYP PESDEIKARL VTRPDDTEEK VKARLQIYKQ NSEAIISAYS 180
  181 DVMVKIDANR PKEVVFEETQ TLLSQIQLKR MIKTDKASP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.0
Match: 1zakA
Description: Adenylate kinase; Microbial and mitochondrial ADK, insert "zinc finger" domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleobase, nucleoside, nucleotide kinase activity 5.63633783771436 bayes_pls_golite062009
nucleotide kinase activity 4.87013305162694 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 4.71956130169341 bayes_pls_golite062009
adenylate kinase activity 3.67594732794865 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 2.29455092461489 bayes_pls_golite062009
nucleic acid binding 2.11222585187695 bayes_pls_golite062009
DNA binding 1.7904783386531 bayes_pls_golite062009
transcription regulator activity 1.68903321260301 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 1.39044805677656 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 1.27520023113176 bayes_pls_golite062009
protein binding 1.22129154759482 bayes_pls_golite062009
ion transmembrane transporter activity 1.1237520329736 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.03581449013603 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
guanylate kinase activity 0.98934362137863 bayes_pls_golite062009
cation transmembrane transporter activity 0.940135818362306 bayes_pls_golite062009
structural constituent of ribosome 0.738234102557832 bayes_pls_golite062009
motor activity 0.68122766055454 bayes_pls_golite062009
transcription factor activity 0.603758349693077 bayes_pls_golite062009
purine nucleotide binding 0.569910969126728 bayes_pls_golite062009
purine ribonucleotide binding 0.568840867400671 bayes_pls_golite062009
ribonucleotide binding 0.568779924702229 bayes_pls_golite062009
nucleotide binding 0.564275755355315 bayes_pls_golite062009
CTP synthase activity 0.554689818807922 bayes_pls_golite062009
microtubule motor activity 0.48522137429998 bayes_pls_golite062009
translation regulator activity 0.29096092258568 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.274994961137851 bayes_pls_golite062009
formate-tetrahydrofolate ligase activity 0.21533099279384 bayes_pls_golite062009
ATP binding 0.1860481660648 bayes_pls_golite062009
adenyl ribonucleotide binding 0.152859582615242 bayes_pls_golite062009
adenyl nucleotide binding 0.138615225841109 bayes_pls_golite062009
helicase activity 0.0775311459068899 bayes_pls_golite062009
structural molecule activity 0.0558641287316701 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [299-408] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQDKWRGIPT RLNNIPHSRD IRAYFYEDVL QATIRSIKDG NTRLRVDINI PELNPEMDVY  60
   61 RIGTLMELVQ ALALSFADDG KRVKVCVQGS MGEGALAGMP LQLAGTRKIL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 1rr9A
Description: Catalytic domain of E.coli Lon protease
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [409-588] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYMDWGDDET LGTFVKLGAI GGKEVDEEDD MFILVAPQNA VGNCIIDDLQ AMTTAAGKRP  60
   61 VVLINPRLKD LPASSGIMQT MGREQRLEYA LTFDNCYVFR LLYYLGTQYP IMGALRMSYP 120
  121 YRYELYKRVN EENGKEKYVL LATYAERPTP EQIDDAFSGK SRDQSKKASG IWGFLSSVFS 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.585027
Match: PF09353.1
Description: No description for PF09353.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle