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View Structure Prediction Details

Protein: LEUC_ARATH
Organism: Arabidopsis thaliana
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEUC_ARATH.

Description E-value Query
Range
Subject
Range
gi|7268046, gi|4... - pir||T06300 hypothetical protein T9E8.170 - Arabidopsis thaliana, gi|7268046|emb|CAB78385.1| putativ...
590.0 [0..1] [509..1]

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Predicted Domain #1
Region A:
Residues: [1-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT  60
   61 GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD VCGPGAFGIF KREFGEKAKV 120
  121 WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH 180
  181 VALAQEGHCR PGEVLLGTDS HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI 240
  241 LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK 300
  301 NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA 360
  361 RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV PTFLVPATQK VWMDVYALPV 420
  421 PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK 480
  481 EGQIYLASPY TAAASALTGR VADPREFLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 136.0
Match: 2b3xA
Description: Structure of an orthorhombic crystal form of human cytosolic aconitase (IRP1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-isopropylmalate dehydratase activity 11.6597692115322 bayes_pls_golite062009
catalytic activity 2.4040324437254 bayes_pls_golite062009
carbon-oxygen lyase activity 2.08349115784849 bayes_pls_golite062009
hydro-lyase activity 2.04845291489052 bayes_pls_golite062009
lyase activity 2.0080619912194 bayes_pls_golite062009
structural constituent of ribosome 0.952569345633996 bayes_pls_golite062009
aconitate hydratase activity 0.681826117995502 bayes_pls_golite062009
nucleic acid binding 0.0023376634609541 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle