| Protein: | KU80_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 680 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KU80_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
626.0 | [0..18] | [680..1] |
|
Region A: Residues: [1-530] |
1 11 21 31 41 51
| | | | | |
1 MARNREGLVL VLDVGPAMRS VLPDVEKACS MLLQKKLIYN KYDEVGIVVF GTEETGNELA 60
61 REIGGYENVT VLRNIRVVDE LAAEHVKQLP RGTVAGDFLD ALIVGMDMLI KMYGNAHKGK 120
121 KRMCLITNAA CPTKDPFEGT KDDQVSTIAM KMAAEGIKME SIVMRSNLSG DAHERVIEEN 180
181 DHLLTLFSSN AIAKTVNVDS PLSLLGSLKT RRVAPVTLFR GDLEINPTMK IKVWVYKKVA 240
241 EERLPTLKMY SDKAPPTDKF AKHEVKVDYD YKVTAESTEV IAPEERIKGF RYGPQVIPIS 300
301 PDQIETLKFK TDKGMKLLGF TEASNILRHY YMKDVNIVVP DPSKEKSVLA VSAIAREMKE 360
361 TNKVAIVRCV WRNGQGNVVV GVLTPNVSER DDTPDSFYFN VLPFAEDVRE FPFPSFNKLP 420
421 SSWKPDEQQQ AVADNLVKML DLAPSAEEEV LKPDLTPNPV LQRFYEYLEL KSKSTDATLP 480
481 PMDGTFKRLM EQDPELSSNN KSIMDTFRGS FEVKENPKLK KASKRLLRDK
|
| Detection Method: |  |
| Confidence: | 102.0 |
| Match: | 1jeqB |
| Description: | Ku80 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| double-stranded telomeric DNA binding | 8.29108426371603 | bayes_pls_golite062009 |
| telomeric DNA binding | 5.16364366157397 | bayes_pls_golite062009 |
| binding | 2.75824485094584 | bayes_pls_golite062009 |
| protein binding | 2.58357303743968 | bayes_pls_golite062009 |
| promoter binding | 2.1752902301709 | bayes_pls_golite062009 |
| transcription activator activity | 1.52393053398849 | bayes_pls_golite062009 |
| transcription regulator activity | 1.27592771659837 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.985753648509262 | bayes_pls_golite062009 |
| protein complex binding | 0.94234534987624 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.814975395718076 | bayes_pls_golite062009 |
| protein dimerization activity | 0.73404855126602 | bayes_pls_golite062009 |
| DNA helicase activity | 0.720743494912414 | bayes_pls_golite062009 |
| nucleic acid binding | 0.655463239522058 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.64812784969409 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.506640285146188 | bayes_pls_golite062009 |
| DNA binding | 0.496246846559375 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.450760554291027 | bayes_pls_golite062009 |
| receptor binding | 0.234020194580985 | bayes_pls_golite062009 |
| transcription repressor activity | 0.233577421367532 | bayes_pls_golite062009 |
| protein C-terminus binding | 0.15516806759612 | bayes_pls_golite062009 |
| identical protein binding | 0.125363466534611 | bayes_pls_golite062009 |
|
Region A: Residues: [531-680] |
1 11 21 31 41 51
| | | | | |
1 PSGSDDEDNR MITYDAKENK IDIVGDANPI QDFEAMISRR DKTDWTEKAI TQMKNLIMKL 60
61 VENCTDEGDK ALECVLALRK GCVLEQEPKQ FNEFLNHLFK LCQERNLSHL LEHFMSKKIT 120
121 LIPKSEAADS DIVDENAGDF IVKQESMLES
|
| Detection Method: | |
| Confidence: | 45.30103 |
| Match: | 1rw2A |
| Description: | Three-dimensional structure of Ku80 CTD |
Matching Structure (courtesy of the PDB): |
|
