| Protein: | gi|26451026, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 488 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26451026, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
390.0 | [0..1] | [488..1] |
|
|
262.0 | [0..124] | [488..93] |
|
|
253.0 | [0..114] | [488..84] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK 60
61 LVRDVLEVFL LSTPGEALVP ETVAPAKN
|
| Detection Method: |  |
| Confidence: | 5.920819 |
| Match: | PF08766.2 |
| Description: | No description for PF08766.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.840 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
|
Region A: Residues: [89-177] |
1 11 21 31 41 51
| | | | | |
1 ETVSVAAASV GGEDERFICK LSEKQNATVQ RYRGQPFLSI GSQEHGKAFR GAHLSTNQWS 60
61 VIKKNFAAIE DGIKQCQSKL KSEAARNGD
|
| Detection Method: | |
| Confidence: | 2.6 |
| Match: | 1pcfA |
| Description: | Transcriptional coactivator PC4 C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [178-267] |
1 11 21 31 41 51
| | | | | |
1 TSEAVDKDSS HGFSVIKISR FDGKSYLYWA SQMELFLKQL KLTYVLSEPC PSIGSSQGPE 60
61 TNPREITRAD ATGKKWLRDD YLCYTHLMNS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [268-409] |
1 11 21 31 41 51
| | | | | |
1 LSDHLYRRYS QKFKHAKELW DELKWVYQCD ESKSKRSQVR KYIEFRMVEE RPILEQVQVF 60
61 NKIADSIVSA GMFLDEAFHV STIISKFPPS WRGFCTRLME EEYLPVWMLM ERVKAEEELL 120
121 RNGAKGVTYR PATGSSQMER TP
|
| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 1e6jP |
| Description: | HIV capsid protein, dimerisation domain; HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [410-488] |
1 11 21 31 41 51
| | | | | |
1 SLGTTHRGSQ SVGWKRKEPE RDERVIIVCD NCGRKGHLAK HCWGSKSDER ASGKSNRINS 60
61 SVAAPVESET QATTNNDRG
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
