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Protein Overview: gi|26451026, gi|...

General Information:
Name(s) found: gi|30678785 [NCBI NR]
gi|29028884 [NCBI NR]
gi|26451026 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|30678785|ref|NP_567205.2| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|29028884|gb|AAO64821.1| At4g00980 [Arabidopsis thaliana] [NCBI NR]
  • gi|26451026|dbj|BAC42619.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 488 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA][ISS]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK  60
   61 LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG EDERFICKLS EKQNATVQRY 120
  121 RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE 180
  181 AVDKDSSHGF SVIKISRFDG KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP 240
  241 REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK 300
  301 SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG 360
  361 FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT GSSQMERTPS LGTTHRGSQS 420
  421 VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ 480
  481 ATTNNDRG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] Pfam 5.920819 No description for PF08766.2 was found. Confident ab initio structure predictions are available.
    2 View Details [89..177] FFAS03 2.6 Transcriptional coactivator PC4 C-terminal domain
    3 View Details [178..267] deduced N/A No confident structure predictions are available.
    4 View Details [268..409] PSI-BLAST 17.69897 HIV capsid protein, dimerisation domain; HIV-1 capsid protein
    5 View Details [410..488] PSI-BLAST 12.221849 NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle