YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|19881576, gi|...

General Information:
Name(s) found: gi|37533038 [NCBI NR]
gi|31431306 [NCBI NR]
gi|19881576 [NCBI NR]
Description(s) found:
Found 6 descriptions.
SHOW ALL
  • gi|37533038|ref|NP_920821.1| putative retroelement [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|31431306|gb|AAP53108.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|19881576|gb|AAM00977.1|AC090482_6 Putative retroelement [Oryza sativa] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 493 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPGAGAAA AGGDGAPGAR GGAPGSGGGA ANNNTNGGNS ASQSSGGPFS GYILLLLLFL  60
   61 LLALYCFVPV PDVHDTFSIL LCYCYVPVPD IHSYVPIHDA HDSILLVMLH VSTRSPYTVY 120
  121 AMIIVLTFWI KICRFMAIFP TIQKPDRSFS VVGFAAALKP HAFDGSNYKR WKARALLWLT 180
  181 AMQCFYVSRG KRSEPPLSSE EEAKFEASDC LFQGALISVL ADNIVDVYMH MPSGKDMWDA 240
  241 LEAKFGVSDA GSELYVMEQF YDYKMVDDRS VVEQAHEIQM LAKELENNNC ELPDKFVAGG 300
  301 IIAKLPPSWS DFATSLKHKR QEFSVSDLIG SLGVEEKARA KDVRGKKVKG GSSANMVQKK 360
  361 NPHASHNNKK VKLYVKPKAA TNFKKKGKGK AKGDCFVCGK SGHWAKDCPE RKDRKSANMV 420
  421 ISEGGGTSGC GKILPTVLSV FHSPNWWVDT GANIHVGRGS SLLMGNGSLA AVHGVGTVDL 480
  481 KFTSGKTVQL KNV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] MSA 3.058987 View MSA. No confident structure predictions are available.
    2 View Details [148..348] PSI-BLAST 28.522879 HIV capsid protein, dimerisation domain; HIV-1 capsid protein
    3 View Details [349..493] PSI-BLAST 13.522879 NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle