| Protein: | gi|19881576, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 493 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19881576, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
468.0 | [0..32] | [493..39] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MSTPGAGAAA AGGDGAPGAR GGAPGSGGGA ANNNTNGGNS ASQSSGGPFS GYILLLLLFL 60
61 LLALYCFVPV PDVHDTFSIL LCYCYVPVPD IHSYVPIHDA HDSILLVMLH VSTRSPYTVY 120
121 AMIIVLTFWI KICRFMAIFP TIQKPDR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [148-348] |
1 11 21 31 41 51
| | | | | |
1 SFSVVGFAAA LKPHAFDGSN YKRWKARALL WLTAMQCFYV SRGKRSEPPL SSEEEAKFEA 60
61 SDCLFQGALI SVLADNIVDV YMHMPSGKDM WDALEAKFGV SDAGSELYVM EQFYDYKMVD 120
121 DRSVVEQAHE IQMLAKELEN NNCELPDKFV AGGIIAKLPP SWSDFATSLK HKRQEFSVSD 180
181 LIGSLGVEEK ARAKDVRGKK V
|
| Detection Method: | |
| Confidence: | 28.522879 |
| Match: | 1e6jP |
| Description: | HIV capsid protein, dimerisation domain; HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [349-493] |
1 11 21 31 41 51
| | | | | |
1 KGGSSANMVQ KKNPHASHNN KKVKLYVKPK AATNFKKKGK GKAKGDCFVC GKSGHWAKDC 60
61 PERKDRKSAN MVISEGGGTS GCGKILPTVL SVFHSPNWWV DTGANIHVGR GSSLLMGNGS 120
121 LAAVHGVGTV DLKFTSGKTV QLKNV
|
| Detection Method: | |
| Confidence: | 13.522879 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
