| Protein: | gi|26451026, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 488 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26451026, gi|....
| Description | E-value | Query Range |
Subject Range |
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390.0 | [0..1] | [488..1] |
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262.0 | [0..124] | [488..93] |
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253.0 | [0..114] | [488..84] |
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Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK 60
61 LVRDVLEVFL LSTPGEALVP ETVAPAKN
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| Detection Method: |  |
| Confidence: | 5.920819 |
| Match: | PF08766.2 |
| Description: | No description for PF08766.2 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.840 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.840 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.788 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.774 | N/A | N/A | a.8.9 | Description not found. |
| View | Download | 0.774 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.772 | N/A | N/A | a.24.28 | Description not found. |
| View | Download | 0.770 | N/A | N/A | a.24.28 | Description not found. |
| View | Download | 0.766 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.716 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.697 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.493 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.411 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.334 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.233 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.223 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
|
Region A: Residues: [89-177] |
1 11 21 31 41 51
| | | | | |
1 ETVSVAAASV GGEDERFICK LSEKQNATVQ RYRGQPFLSI GSQEHGKAFR GAHLSTNQWS 60
61 VIKKNFAAIE DGIKQCQSKL KSEAARNGD
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| Detection Method: | |
| Confidence: | 2.6 |
| Match: | 1pcfA |
| Description: | Transcriptional coactivator PC4 C-terminal domain |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [178-267] |
1 11 21 31 41 51
| | | | | |
1 TSEAVDKDSS HGFSVIKISR FDGKSYLYWA SQMELFLKQL KLTYVLSEPC PSIGSSQGPE 60
61 TNPREITRAD ATGKKWLRDD YLCYTHLMNS
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.568 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.568 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.477 | d.189.1 | PX domain |
| View | Download | 0.472 | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.420 | a.126.1 | Serum albumin-like |
| View | Download | 0.420 | a.126.1 | Serum albumin-like |
| View | Download | 0.419 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.332 | c.23.4 | Succinyl-CoA synthetase domains |
| View | Download | 0.327 | c.47.1 | Thioredoxin-like |
|
Region A: Residues: [268-409] |
1 11 21 31 41 51
| | | | | |
1 LSDHLYRRYS QKFKHAKELW DELKWVYQCD ESKSKRSQVR KYIEFRMVEE RPILEQVQVF 60
61 NKIADSIVSA GMFLDEAFHV STIISKFPPS WRGFCTRLME EEYLPVWMLM ERVKAEEELL 120
121 RNGAKGVTYR PATGSSQMER TP
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| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 1e6jP |
| Description: | HIV capsid protein, dimerisation domain; HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [410-488] |
1 11 21 31 41 51
| | | | | |
1 SLGTTHRGSQ SVGWKRKEPE RDERVIIVCD NCGRKGHLAK HCWGSKSDER ASGKSNRINS 60
61 SVAAPVESET QATTNNDRG
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| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
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