YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229604371, gi...
Organism:	Bacillus anthracis str. A0248
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229604371, gi....

Description	E-value	Query Range	Subject Range
gi\|228655231, gi... - gi\|229128372\|ref\|ZP_04257353.1\| AraC-family transcriptional regulator [Bacillus cereus BDRD-Cer4], g... gi\|29896701, gi\|... - gi\|30021148\|ref\|NP_832779.1\| AraC family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	8.0E-66	[1..296]	[1..296]
gi\|49480052, gi\|... - gi\|49480052\|ref\|YP_037140.1\| AraC family transcriptional regulator [Bacillus thuringiensis serovar k...	5.0E-64	[1..296]	[1..296]
gi\|42782144, gi\|... - gi\|42782144\|ref\|NP_979391.1\| AraC family transcriptional regulator [Bacillus cereus ATCC 10987], gi\|...	7.0E-64	[1..296]	[1..296]
gi\|51975934, gi\|... - gi\|52142465\|ref\|YP_084363.1\| AraC family transcriptional regulator [Bacillus cereus E33L], gi\|519759...	1.0E-63	[1..296]	[1..296]
gi\|163940775, gi... - gi\|89207155\|ref\|ZP_01185702.1\| Helix-turn-helix, AraC type:Bacterial transcription activator, effect...	2.0E-63	[1..296]	[1..296]
gi\|47554728, gi\|... - gi\|47568632\|ref\|ZP_00239330.1\| transcriptional regulator, AraC family, putative [Bacillus cereus G92...	4.0E-63	[1..296]	[1..296]
gi\|88934446, gi\|... - gi\|88934446\|ref\|ZP_01140089.1\| Helix-turn-helix, AraC type [Geobacter uraniumreducens Rf4], gi\|88918...	1.0E-55	[3..293]	[49..332]
gi\|34499596, gi\|... - gi\|34499596\|ref\|NP_903811.1\| AraC family transcription regulator [Chromobacterium violaceum ATCC 124...	4.0E-55	[7..294]	[4..286]
gi\|25350135, gi\|... - gi\|25350135\|pir\|\|AG0888 probable AraC-family transcription regulator STY3352 [imported] - Salmonella... gi\|213424350 - gi\|213424350\|ref\|ZP_03357174.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|213647441 - gi\|213647441\|ref\|ZP_03377494.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|29143438, gi\|... - gi\|29143438\|ref\|NP_806780.1\| AraC family transcription regulator [Salmonella enterica subsp. enteric... gi\|213973981 - gi\|213973981\|ref\|ZP_03401240.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|16761951 - gi\|16761951\|ref\|NP_457568.1\| AraC family transcription regulator [Salmonella enterica subsp. enteric... gi\|214001849 - gi\|214001849\|ref\|ZP_03412584.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|213027199 - gi\|213027199\|ref\|ZP_03341646.1\| AraC family transcription regulator [Salmonella enterica subsp. ente... gi\|213417333 - gi\|213417333\|ref\|ZP_03350475.1\| AraC family transcription regulator [Salmonella enterica subsp. ente...	4.0E-55	[10..294]	[9..288]
gi\|56129373, gi\|... - gi\|56415116\|ref\|YP_152191.1\| AraC family transcription regulator [Salmonella enterica subsp. enteric... gi\|197364045, gi... - gi\|197364045\|ref\|YP_002143682.1\| possible AraC-family transcriptional regulator [Salmonella enterica...	5.0E-55	[10..294]	[9..288]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKQSRNEY LQRIYKVQNY IELHINDSLS IEELADIAGF SKYHFHRIFK GIVDEPLSRY  60
   61 VNRLKLERAT NLLTYRSDMT ITDITYHFGF TDSAVFSRTF KNYYGVSPSQ YRNDNSKNCK 120
  121 DVRRISQYNE CKKVRRNVEI VTVDNINVAY IRHIGTYEEL TIAFPKMIEK LFQYATKQNY 180
  181 HVFEDTKVLT IYHDHHEFTE DNHLRTSLCI TIPGESAIET NDIGIMVIPS GKYAVGHFEI 240
  241 FQDEYKRAWD FIYGEWLPNS GYKPRDSYPF EVYRNDPKQH PKHKHIVDIY VPIEPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	1d5yA
Description:	Rob transcription factor, N-terminal domain; Rob transcription factor, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	0.95250175744355	bayes_pls_golite062009
binding	0.762530907978737	bayes_pls_golite062009
nucleic acid binding	0.685454172244145	bayes_pls_golite062009
DNA binding	0.505217017391245	bayes_pls_golite062009
sequence-specific DNA binding	0.46503550280898	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.24108783215685	bayes_pls_golite062009
transcription repressor activity	0.20862059645422	bayes_pls_golite062009
protein binding	0.111941607625758	bayes_pls_golite062009
transcription factor activity	0.0382141192170726	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: