YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|213424350

General Information:
Name(s) found: gi|213424350 [NCBI NR]
Description(s) found:
  • gi|213424350|ref|ZP_03357174.1| AraC family transcription regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
    Length: 288 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLISAAYS ERLRRVCDHI ERHLDEPLSL EALSRMAHSS PFHFHRQFTV WSGLPLYRYI  60
   61 QWLRLRRASW RLAFNPQDKV IDIALDAGFQ NPESFTRAFK TAFGQSPCRF RQSPDWLAWH 120
  121 QRVPKLALQE QHVMDVKIVE FPPTRVAMLT HLGHPDKVNA SAAKFIAWRR ETGQSPIASS 180
  181 QTFGIAWHDP QTTPPAQFRF DICGSVRQPI AENDVGVVNS EIPGGRCAVV RHQGSLDSLP 240
  241 ESVWYLFREW LPASGETLRD FPVFFQYLNF VHEVAEHELL TDIYLPLR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..288] PSI-BLAST 43.09691 Rob transcription factor, N-terminal domain; Rob transcription factor, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.57523737355937 bayes_pls_golite062009
  • DNA binding
    		•  3.00143272905695 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.89825020286436 bayes_pls_golite062009
  • transcription factor activity
    		•  2.53664874743748 bayes_pls_golite062009
  • binding
    		•  1.68817361068715 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.46503550280898 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.24108783215685 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.20862059645422 bayes_pls_golite062009
  • protein binding
    		•  0.111941607625758 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle