YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238911618
Organism:	Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238911618.

Description	E-value	Query Range	Subject Range
gi\|37197841, gi\|... - gi\|37679099\|ref\|NP_933708.1\| putative metalloprotease [Vibrio vulnificus YJ016], gi\|37197841\|dbj\|BAC...	5.0E-57	[4..154]	[99..249]
YBEY_SALPK - Endoribonuclease YbeY OS=Salmonella paratyphi A (strain AKU_12601) GN=ybeY PE=3 SV=1 YBEY_SALPA - Endoribonuclease YbeY OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ybeY PE=3 SV=1 RRMF_SALPA, YBEY... - Putative metalloprotease ybeY OS=Salmonella paratyphi A GN=ybeY PE=3 SV=1, Probable rRNA maturation ...	1.0E-56	[1..157]	[1..157]
YBEY_SALTY - Endoribonuclease YbeY OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ybeY PE=3 S... YBEY_SALTY - Putative metalloprotease ybeY OS=Salmonella typhimurium GN=ybeY PE=3 SV=2 gi\|205330884, gi... - gi\|205330884\|gb\|EDZ17648.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=ybeY] [protein=putative metalloprotease] [protein_id=YP_005236385.1] [location=complement(7332... RRMF_SALTY, YBEY... - Putative metalloprotease ybeY OS=Salmonella typhimurium GN=ybeY PE=3 SV=2, Probable rRNA maturation ...	1.0E-56	[1..157]	[1..157]
gi\|77979049 - gi\|77979049\|ref\|ZP_00834471.1\| COG0319: Predicted metal-dependent hydrolase [Yersinia intermedia ATC...	4.0E-56	[1..156]	[1..156]
gi\|77962186 - gi\|77962186\|ref\|ZP_00826010.1\| COG0319: Predicted metal-dependent hydrolase [Yersinia mollaretii ATC...	9.0E-56	[1..157]	[1..157]
gi\|77973047 - gi\|77973047\|ref\|ZP_00828600.1\| COG0319: Predicted metal-dependent hydrolase [Yersinia frederiksenii ...	3.0E-55	[1..157]	[1..157]
gi\|77957559 - gi\|77957559\|ref\|ZP_00821611.1\| COG0319: Predicted metal-dependent hydrolase [Yersinia bercovieri ATC...	4.0E-55	[1..157]	[1..157]
YBEY_YERPB - Endoribonuclease YbeY OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ybeY PE=3 SV=1 YBEY_YERP3 - Endoribonuclease YbeY OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ybeY PE=3 SV... YBEY_YERPS - Endoribonuclease YbeY OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=ybeY PE=3 SV=1 RRMF_YERPS, Y111... - Putative metalloprotease YPTB1111 OS=Yersinia pseudotuberculosis GN=YPTB1111 PE=3 SV=1, Probable rRN...	9.0E-55	[1..157]	[1..157]
YD10_PHOLL, Y131... - (Q7N748) Hypothetical UPF0054 protein plu1310, Putative metalloprotease plu1310 OS=Photorhabdus lumi... YBEY_PHOLL - Endoribonuclease YbeY OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / ...	7.0E-54	[1..154]	[1..154]
YBEY_PECAS - Endoribonuclease YbeY OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ybeY PE=3 ... RRMF_ERWCT, Y131... - Putative metalloprotease ECA1317 OS=Erwinia carotovora subsp. atroseptica GN=ECA1317 PE=3 SV=1, Prob...	9.0E-54	[1..154]	[1..154]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVILDLQL ACENHAGLPD EAQFQRWLDG VIPQFQEEAE VTIRLVDEAE SHDLNLTYRG  60
   61 KDKPTNVLSF PFEAPPGIEM PLLGDLIICR QVVEQEAQEQ SKPLEAHWAH MVVHGSLHLL 120
  121 GYDHIDDDEA EEMESLETEI MLAMGYEDPY IAEKIAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	1xm5A
Description:	Crystal structure of hypothetical protein ybeY from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	1.82441002770327	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.636735406617	bayes_pls_golite062009
metallopeptidase activity	1.01800186871128	bayes_pls_golite062009
catalytic activity	0.891187593353827	bayes_pls_golite062009
endopeptidase activity	0.781297363942133	bayes_pls_golite062009
binding	0.492746574205109	bayes_pls_golite062009
metalloendopeptidase activity	0.282068540258585	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: