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View Structure Prediction Details

Protein: gi|229607618, gi...
Organism: Vibrio cholerae MJ-1236
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229607618, gi....

Description E-value Query
Range
Subject
Range
RUVA_VIBVU - Holliday junction ATP-dependent DNA helicase RuvA OS=Vibrio vulnificus GN=ruvA PE=3 SV=1
RUVA_VIBVY - Holliday junction ATP-dependent DNA helicase RuvA OS=Vibrio vulnificus (strain YJ016) GN=ruvA PE=3 S...
RUVA_VIBVU - Holliday junction ATP-dependent DNA helicase RuvA OS=Vibrio vulnificus (strain CMCP6) GN=ruvA PE=3 S...
267.0 [0..1] [204..1]
gi|91188507, gi|... - gi|91227614|ref|ZP_01261918.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 12...
267.0 [0..1] [204..1]
gi|37199217, gi|... - gi|37680469|ref|NP_935078.1| Holliday junction DNA helicase motor protein [Vibrio vulnificus YJ016],...
264.0 [0..2] [204..4]
gi|86146483, gi|... - gi|86146483|ref|ZP_01064806.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222], gi|...
RUVA_VIBTL - Holliday junction ATP-dependent DNA helicase RuvA OS=Vibrio tasmaniensis (strain LGP32) GN=ruvA PE=3...
263.0 [0..1] [204..1]
gi|84377068, gi|... - gi|84388519|ref|ZP_00991066.1| Holliday junction DNA helicase motor protein [Vibrio splendidus 12B01...
262.0 [0..1] [204..1]
RUVA_VIBPA - Holliday junction ATP-dependent DNA helicase RuvA OS=Vibrio parahaemolyticus serotype O3:K6 (strain ...
RUVA_VIBPA - Holliday junction ATP-dependent DNA helicase RuvA OS=Vibrio parahaemolyticus GN=ruvA PE=3 SV=1
261.0 [0..1] [204..1]
RUVA_PSEU2 - Holliday junction ATP-dependent DNA helicase RuvA OS=Pseudomonas syringae pv. syringae (strain B728a...
258.0 [0..1] [203..1]
RUVA_PSESM - Holliday junction ATP-dependent DNA helicase RuvA OS=Pseudomonas syringae pv. tomato (strain DC3000)...
RUVA_PSESM - Holliday junction ATP-dependent DNA helicase ruvA OS=Pseudomonas syringae pv. tomato GN=ruvA PE=3 SV...
gi|213926183, gi... - gi|213969185|ref|ZP_03397324.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato...
258.0 [0..1] [203..1]
RUVA_PSEAE - Holliday junction ATP-dependent DNA helicase ruvA OS=Pseudomonas aeruginosa GN=ruvA PE=3 SV=1
gi|194556234, gi... - gi|84322552|ref|ZP_00970637.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Pseudomo...
gi|254239314, gi... - gi|84316457|ref|ZP_00964931.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Pseudomo...
RUVA_PSEAB - Holliday junction ATP-dependent DNA helicase RuvA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=r...
RUVA_PSEAE - Holliday junction ATP-dependent DNA helicase RuvA OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO...
gi|107100423 - gi|107100423|ref|ZP_01364341.1| hypothetical protein PaerPA_01001448 [Pseudomonas aeruginosa PACS2]
RUVA_PSEA8 - Holliday junction ATP-dependent DNA helicase RuvA OS=Pseudomonas aeruginosa (strain LESB58) GN=ruvA ...
RUVA_PSEA7 - Holliday junction ATP-dependent DNA helicase RuvA OS=Pseudomonas aeruginosa (strain PA7) GN=ruvA PE=...
258.0 [0..1] [204..1]
RUVA_PSE14 - Holliday junction ATP-dependent DNA helicase RuvA OS=Pseudomonas savastanoi pv. phaseolicola (strain...
258.0 [0..1] [203..1]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRLRGTLI EKLPPQILIE VGGIGYEVQM PMSCIYELPN IGEEAIIYTH FVVREDAQLL  60
   61 YGFNTVSERA LFREVIKANG VGPKMGLAIL SGMTANQFVT CVEKEDISTL IKLPGVGKKT 120
  121 AERLVVEMKD RLKGWGAGDL FTPATDAAPV DSTPVIAQNA QEEAMSALLA LGYKPPQASK 180
  181 AVSQVAKAGM SSEELIREAL KSMV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.69897
Match: 1bdxA
Description: DNA helicase RuvA subunit, C-terminal domain; DNA helicase RuvA subunit, middle domain; DNA helicase RuvA subunit, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
four-way junction helicase activity 6.5377357736202 bayes_pls_golite062009
DNA helicase activity 4.17140899815273 bayes_pls_golite062009
endodeoxyribonuclease activity 3.43738564958931 bayes_pls_golite062009
helicase activity 3.41619150983834 bayes_pls_golite062009
deoxyribonuclease activity 3.18777140839084 bayes_pls_golite062009
excinuclease ABC activity 2.75922711242844 bayes_pls_golite062009
nucleic acid binding 1.99569639221804 bayes_pls_golite062009
structure-specific DNA binding 1.68542948433544 bayes_pls_golite062009
binding 1.60192408330567 bayes_pls_golite062009
single-stranded DNA binding 1.58506920916947 bayes_pls_golite062009
DNA binding 1.33645375386113 bayes_pls_golite062009
endonuclease activity 1.07194065760938 bayes_pls_golite062009
damaged DNA binding 1.01799678384131 bayes_pls_golite062009
ATP-dependent DNA helicase activity 1.01626429465845 bayes_pls_golite062009
structural constituent of ribosome 0.83740886071361 bayes_pls_golite062009
structural molecule activity 0.53636537261201 bayes_pls_golite062009
nuclease activity 0.29926900436997 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.0954216620147701 bayes_pls_golite062009
exonuclease activity 0.0152988330656798 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle