YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254877846
Organism:	Listeria monocytogenes FSL J2-071
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254877846.

Description	E-value	Query Range	Subject Range
RS9_CALS4 - 30S ribosomal protein S9 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / J... RS9_THETN - 30S ribosomal protein S9 OS=Thermoanaerobacter tengcongensis GN=rpsI PE=3 SV=1	189.0	[0..1]	[130..1]
RS9_BACHD - 30S ribosomal protein S9 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RS9_BACHD - 30S ribosomal protein S9 OS=Bacillus halodurans GN=rpsI PE=3 SV=1	189.0	[0..1]	[130..1]
RS9_CAUCR - 30S ribosomal protein S9 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsI PE=3 SV=1 RS9_CAUCR - 30S ribosomal protein S9 OS=Caulobacter crescentus GN=rpsI PE=3 SV=1 RS9_CAUCN - 30S ribosomal protein S9 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsI PE=3 SV=1	188.0	[0..2]	[130..29]
RS9_CLOTH - 30S ribosomal protein S9 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N... gi\|196196381, gi... - gi\|196254199\|ref\|ZP_03152767.1\| ribosomal protein S9 [Clostridium thermocellum DSM 4150], gi\|1961963...	188.0	[0..1]	[130..1]
gi\|153197624, gi... - gi\|254830973\|ref\|ZP_05235628.1\| 30S ribosomal protein S9 [Listeria monocytogenes 10403S], gi\|1531976... gi\|254912841, gi... - gi\|254912841\|ref\|ZP_05262853.1\| 30S ribosomal protein S9 [Listeria monocytogenes J2818], gi\|15319235... gi\|133728614, gi... - gi\|254829045\|ref\|ZP_05233732.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL N3-165], gi\|153... gi\|153180760, gi... - gi\|254937221\|ref\|ZP_05268918.1\| 30S ribosomal protein S9 [Listeria monocytogenes F6900], gi\|15318076... gi\|255025627 - gi\|255025627\|ref\|ZP_05297613.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-003] RS9_LISMO - 30S ribosomal protein S9 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rps... RS9_LISMO - 30S ribosomal protein S9 OS=Listeria monocytogenes GN=rpsI PE=3 SV=1 gi\|47097150, gi\|... - gi\|47097150\|ref\|ZP_00234717.1\| ribosomal protein S9 [Listeria monocytogenes str. 1/2a F6854], gi\|470... gi\|224499268 - gi\|224499268\|ref\|ZP_03667617.1\| 30S ribosomal protein S9 [Listeria monocytogenes Finland 1988] gi\|254899953, gi... - gi\|254899953\|ref\|ZP_05259877.1\| 30S ribosomal protein S9 [Listeria monocytogenes J0161], gi\|15318564... gi\|224503611 - gi\|224503611\|ref\|ZP_03671918.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL R2-561]	187.0	[0..1]	[130..1]
RS9_CARHZ - 30S ribosomal protein S9 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	187.0	[0..1]	[130..1]
RS9_THEP3 - 30S ribosomal protein S9 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsI PE... gi\|241904306, gi... - gi\|241904306\|ref\|ZP_04789008.1\| ribosomal protein S9 [Thermoanaerobacter brockii subsp. finnii Ako-1... gi\|242230680, gi... - gi\|242257836\|ref\|ZP_04802686.1\| ribosomal protein S9 [Thermoanaerobacter sp. X513], gi\|242230680\|gb\|... RS9_THEPX - 30S ribosomal protein S9 OS=Thermoanaerobacter sp. (strain X514) GN=rpsI PE=3 SV=1	187.0	[0..1]	[130..1]
RS9_BACSK - 30S ribosomal protein S9 OS=Bacillus clausii (strain KSM-K16) GN=rpsI PE=3 SV=1	186.0	[0..1]	[130..1]
RS9_OCEIH - 30S ribosomal protein S9 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE... RS9_OCEIH - 30S ribosomal protein S9 OS=Oceanobacillus iheyensis GN=rpsI PE=3 SV=1	186.0	[0..1]	[130..1]
gi\|89084932, gi\|... - gi\|89100311\|ref\|ZP_01173176.1\| 30S ribosomal protein S9 [Bacillus sp. NRRL B-14911], gi\|89084932\|gb\|...	185.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVQYYGTG RRKSSVARVR LVPGDGKIVI NNRDWEDYIP FAALREVIKQ PLVATETLGN  60
   61 YDVLVNVHGG GYTGQAGAIR HGVARALLQV APEYRPALKS AGLLTRDPRM KERKKYGLKG 120
  121 ARRAPQFSKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1vs5I
Description:	No description for 1vs5I was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.32829196949019	bayes_pls_golite062009
structural molecule activity	6.75880680396215	bayes_pls_golite062009
3'-5'-exoribonuclease activity	1.56111033008721	bayes_pls_golite062009
RNA binding	1.40868766468494	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.35935222635763	bayes_pls_golite062009
exoribonuclease activity	1.31205157616894	bayes_pls_golite062009
3'-5' exonuclease activity	1.10842504252923	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
nucleic acid binding	0.555181608481691	bayes_pls_golite062009
binding	0.478154009944658	bayes_pls_golite062009
transcription regulator activity	0.368412900600617	bayes_pls_golite062009
ribonuclease activity	0.19921800066954	bayes_pls_golite062009
DNA binding	0.0880977286684361	bayes_pls_golite062009
mRNA binding	0.0491645692672305	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	6.9430052008157E-5	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: