| Protein: | lig-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 773 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lig-1.
| Description | E-value | Query Range |
Subject Range |
|
|
620.0 | [0..1] | [728..4] |
|
Region A: Residues: [1-635] |
1 11 21 31 41 51
| | | | | |
1 MFFSKAGKAA VEWAKGSKVP YKEFALTLEK IEELSGKKKV DELAQFFTKV LDFSPDDLTA 60
61 CVYMSVNQLG PSYEGLELGV AENSLIKAVA KATGRTEGKI KEDLRAKGDL GTVAQQSRSN 120
121 QKMLAVPKAL TVPTVFNKLT EIAKLSGTSA MNKKVDAISA LLIACQGIEA RFLVRMLAGK 180
181 MRIGLGEQSV LSALGHAFTL SKITDQKVRG DKLDSLKDAN VKRVKTAYCE CPNYNRLIEV 240
241 ALTEGVEALV EKCKLSPGIP LKPMLAHPTK GIDEIMRRFR NQTMTCEWKY DGERGQIHKR 300
301 EDGQIFIYSR NQENNTTKYP DIIEKISSCI GDGVTSFIVD AEVVAIDEAG LILPFQVLST 360
361 RKRKNATDDN GVKVVVFLFD LLYFNGEPLV RKPLRKRREL LRTNFKKIDG SFYFATSVDT 420
421 NDTDEINSFF DEAVQNKCEG LMIKTLDTEA TYEISRRSHS WLKMKKDYVD GVGDTLDLVV 480
481 MGAYSGVGKR TGVYGGYLLG CYNPTTEEYE SVCKIGTGFT DEDLAEQYKI LQDKKIDKSP 540
541 SYYQFDHTLK PDDTFSPYLV FEVKCADITI SPRHKAASGL TDDGKGISLR FPRFLRIRDD 600
601 KNSDDATSSE QVLEMYKNQE AFANQKIEKA DAVDE
|
| Detection Method: |  |
| Confidence: | 161.0 |
| Match: | 1x9nA |
| Description: | Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ligase activity, forming phosphoric ester bonds | 4.3248432594553 | bayes_pls_golite062009 |
| DNA ligase activity | 4.32201730952065 | bayes_pls_golite062009 |
| DNA ligase (NAD+) activity | 3.23439045843438 | bayes_pls_golite062009 |
| catalytic activity | 2.52414801555837 | bayes_pls_golite062009 |
| ligase activity | 1.91469215096842 | bayes_pls_golite062009 |
| DNA ligase (ATP) activity | 1.83677193007569 | bayes_pls_golite062009 |
|
Region A: Residues: [636-773] |
1 11 21 31 41 51
| | | | | |
1 DDEFEEKEDE EEELNMTNVS EGSSKENPVK EEIKKETPKS VSPKKFEKKP PVKSSPVNKS 60
61 PVKSSPIKKE AEKKKGPVAS IFSSSTKKNE KDVKVESPSP IRKKKLPSDS DESDEETSTN 120
121 KKQPAKKRSR VAIDSDSD
|
| Detection Method: | |
| Confidence: | 1.77 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
