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View Structure Prediction Details

Protein: gi|20259962, gi|...
Organism: Arabidopsis thaliana
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20259962, gi|....

Description E-value Query
Range
Subject
Range
APE2_ARATH - DNA-(apurinic or apyrimidinic site) lyase 2 OS=Arabidopsis thaliana GN=APE2 PE=1 SV=1
284.0 [0..1] [388..202]
gi|215736944, gi... - gi|50726587|dbj|BAD34221.1| AP endonuclease 2-like [Oryza sativa Japonica Group], gi|215736944|dbj|B...
252.0 [0..1] [408..207]
gi|29501198 - gi|29501198|dbj|BAC67542.1| DNA lyase [Isaria tenuipes]
237.0 [0..12] [403..216]
gi|29420515 - gi|29420515|dbj|BAC66501.1| DNA lyase [Cordyceps militaris]
226.0 [0..14] [403..218]
gi|62085796 - gi|62085796|gb|AAX63289.1| DNA lyase [Beauveria bassiana]
gi|62085796|gb|A... - DNA lyase [Cordyceps bassiana]
226.0 [0..12] [387..198]
gi|62085892 - gi|62085892|gb|AAX63337.1| DNA lyase [Cordyceps brongniartii]
224.0 [0..12] [387..198]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRCEAGPDF EKNEFRKWFR SLLVERGGSF SDVFRSKHPE RKDAFTCWSS SSGAEQFNYG  60
   61 SRIDHILVAG SCLHQDEDKQ GHSFLACHVK ECDILTEYKR FK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.154902
Match: 1akoA
Description: EXONUCLEASE III FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [103-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NENMPTRWKG GLVTKFKGSD HVPVFISFDD LPDIPEHSTP PLASRYLPMI YGFQQTLVSV  60
   61 FKKRRANEEA KA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [175-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEVSCSSSTQ SNTSSICGDI STGPLRNCGS MGISLEKSCS FENKSTSGVT EAETVAATGS  60
   61 IDNLSDGIRA SSVRALNISR DGDRKKARKI QSSQLSLKSF FTTNSKVNNV EDSSSSYVSS 120
  121 SPSSQVESIT EPNVSGKEDS EPTTSTQEQD QTGSSAKQKN DAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [338-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LMEWQRIQNL MQNSIPLCKG HKEACVARVV KKPGPTFGRR FYVCSRAEGP SSNPEANCGY  60
   61 FKWASSKFRD K

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 8.443697
Match: PF06839.3
Description: No description for PF06839.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle