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Protein Overview: gi|20259962, gi|...

General Information:
Name(s) found: gi|22329202 [NCBI NR]
gi|20259962 [NCBI NR]
gi|17064948 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|22329202|ref|NP_195329.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20259962|gb|AAM13328.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17064948|gb|AAL32628.1| putative protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 408 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [IEA]
    Molecular Function: zinc ion binding [IEA]
    nuclease activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRCEAGPDF EKNEFRKWFR SLLVERGGSF SDVFRSKHPE RKDAFTCWSS SSGAEQFNYG  60
   61 SRIDHILVAG SCLHQDEDKQ GHSFLACHVK ECDILTEYKR FKNENMPTRW KGGLVTKFKG 120
  121 SDHVPVFISF DDLPDIPEHS TPPLASRYLP MIYGFQQTLV SVFKKRRANE EAKAIEVSCS 180
  181 SSTQSNTSSI CGDISTGPLR NCGSMGISLE KSCSFENKST SGVTEAETVA ATGSIDNLSD 240
  241 GIRASSVRAL NISRDGDRKK ARKIQSSQLS LKSFFTTNSK VNNVEDSSSS YVSSSPSSQV 300
  301 ESITEPNVSG KEDSEPTTST QEQDQTGSSA KQKNDAALME WQRIQNLMQN SIPLCKGHKE 360
  361 ACVARVVKKP GPTFGRRFYV CSRAEGPSSN PEANCGYFKW ASSKFRDK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] PSI-BLAST 32.154902 EXONUCLEASE III FROM ESCHERICHIA COLI
    2 View Details [103..174] deduced N/A No confident structure predictions are available.
    3 View Details [175..337] MSA 5.139997 View MSA. No confident structure predictions are available.
    4 View Details [338..408] Pfam 8.443697 No description for PF06839.3 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle