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View Structure Prediction Details

Protein: DRP1B_ARATH
Organism: Arabidopsis thaliana
Length: 610 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRP1B_ARATH.

Description E-value Query
Range
Subject
Range
gi|6850867, gi|1... - gi|6850867|emb|CAB71106.1| dynamin-like protein [Arabidopsis thaliana], pir||T47968 dynamin-like pro...
611.0 [0..1] [610..1]

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Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLIALVNK IQRACTALGD HGEGSSLPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL  60
   61 PRGAGIVTRR PLVLQLHRID EGKEYAEFMH LPKKKFTDFA AVRQEISDET DRETGRSSKV 120
  121 ISTVPIHLSI FSPNVVNLTL VDLPGLTKVA VDGQPESIVQ DIENMVRSFI EKPNCIILAI 180
  181 SPANQDLATS DAIKISREVD PKGDRTFGVL TKIDLMDQGT NAVDILEGRG YKLRYPWVGV 240
  241 VNRSQADINK SVDMIAARRR ERDYFQTSPE YRHLTERMGS EYLGKMLSKH LEVVIKSRIP 300
  301 GLQSLITKTI SELETELSRL GKPV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 2akaB
Description: Structure of the nucleotide-free myosin II motor domain from Dictyostelium discoideum fused to the GTPase domain of dynamin 1 from Rattus norvegicus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.751853066568728 bayes_pls_golite062009
catalytic activity 0.605053499033488 bayes_pls_golite062009
hydrolase activity 0.321203081600051 bayes_pls_golite062009
pyrophosphatase activity 0.0849455401931427 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0845975664628852 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.0838522238732389 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0836101596443754 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [325-507]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AADAGGKLYM IMEICRAFDQ TFKEHLDGTR SGGEKINSVF DNQFPAAIKR LQFDKHLSMD  60
   61 NVRKLITEAD GYQPHLIAPE QGYRRLIESC LVSIRGPAEA AVDAVHSILK DLIHKSMGET 120
  121 SELKQYPTLR VEVSGAAVDS LDRMRDESRK ATLLLVDMES GYLTVEFFRK LPQDSEKGGN 180
  181 PTH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 20.29243
Match: PF01031.11
Description: No description for PF01031.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [508-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIFDRYNDAY LRRIGSNVLS YVNMVCAGLR NSIPKSIVYC QVREAKRSLL DIFFTELGQK  60
   61 EMSKLSKLLD EDPAVQQRRT SIAKRLELYR SAQTDIEAVA WSK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.79588
Match: PF02212.9
Description: No description for PF02212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle