| Protein: | gi|30678102, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 996 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30678102, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
805.0 | [0..136] | [996..11] |
|
Region A: Residues: [1-180] |
1 11 21 31 41 51
| | | | | |
1 MDVTEVPWRR LPQFSVSSRA SWLVSSGFPL SSYMFSHVER GKTFRLTLCF GVSRLRPRSA 60
61 IVSAQQEQPP SRLKGLCEVV WIVEADLAAN EHLYVTGDPS TLGSWEPDCA ISMYPTENDN 120
121 EWEAKVKIAS GVNFRYNYLL KAGYGSSSDV IWRPGPQFSL SVPSSVNQDR KIIIRDSWMS 180
181
|
| Detection Method: |  |
| Confidence: | 44.0 |
| Match: | 1cygA |
| Description: | CYCLODEXTRIN GLUCANOTRANSFERASE (E.C.2.4.1.19) (CGTASE) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.722981317967914 | bayes_pls_golite062009 |
| protein binding | 0.0879479556765589 | bayes_pls_golite062009 |
|
Region A: Residues: [181-450] |
1 11 21 31 41 51
| | | | | |
1 MSISSKSQES YGWGSWIDDA YLFPNCVTPA QSEDECTSAD SAIEVPRTHL NDKQVGAESF 60
61 LCDELAAFSS ENSNLSALFS DNYQPIEEPW LIQESITLQH ERNMQTDSEQ DVESCDDNEN 120
121 NLNTDEQNHQ LTETLLPDGG FFQSESIATT ILINSSICTV QRIAVLEGGK LVELLLEPVK 180
181 TNVQCDSVYL GVITKFVPHM GGAFVNIGSA RHSFMDIKSN REPFIFPPFC DGSKKQAADG 240
241 SPILSMNDIP APHEIEHASY DFEASSLLDI
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.68001901218686 | bayes_pls_golite062009 |
| transcription termination factor activity | 1.25040026044036 | bayes_pls_golite062009 |
| catalytic activity | 0.471337605075652 | bayes_pls_golite062009 |
| RNA binding | 0.39047349004516 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.10784642594092 | bayes_pls_golite062009 |
| binding | 0.0434890829293879 | bayes_pls_golite062009 |
|
Region A: Residues: [451-996] |
1 11 21 31 41 51
| | | | | |
1 DSNDPGESFH DDDDEHENDE YHVSDHLAGL VNGTVVNHGA VEVGSENGHI PMERGHSADS 60
61 LDSNASVAKA SKVMSSKDNK WIQVRKGTKI IVQVVKEGLG TKGPTLTAYP KLRSRFWVLL 120
121 TRCKRIGVSK KISGVERTRL KVIAKTLQPQ GFGLTVRTVA AGHSLEELQK DLDGLLLTWK 180
181 NITDEAKSAA LAADEGVEGA IPALLHRAMG QTLSVVQDYF NDKVEKMVVD SPRTYHEVTH 240
241 YLQDMAPDLC NRVELHDKGI PLFDLYEIEE EIEGILSKRV PLSNGGSLVI EQTEALVSID 300
301 VNGGHGMFGQ GNSQEKAILE VNLAAARQIA REIRLRDIGG IIVVDFIDMA DESNKRLVYE 360
361 EVKKAVERDR SLVKVSELSR HGLMEITRKR VRPSVTFMIS EPCSCCHATG RVEALETTFS 420
421 KIEQEICRQL AKMEKRGDLE NPKSWPRFIL RVDSHMSSFL TTGKRTRLAI LSSSLKVWIL 480
481 LKVARHFTRG TFEVKPFMDE KTVNERQHQV AISLLKKADA IADSSGKKKL TLIPIKKEKT 540
541 SGKQRR
|
| Detection Method: | |
| Confidence: | 170.0 |
| Match: | 2bx2L |
| Description: | Catalytic domain of E. coli RNase E |
Matching Structure (courtesy of the PDB): |
|
