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Protein Overview: gi|30678102, gi|...

General Information:
Name(s) found: gi|30678102 [NCBI NR]
gi|25991183 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|30678102|ref|NP_850987.1| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana] [NCBI NR]
  • gi|25991183|gb|AAN76770.1|AF450479_1 endoribonuclease [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 996 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: chloroplast organization [IMP]
    Molecular Function: endoribonuclease activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVTEVPWRR LPQFSVSSRA SWLVSSGFPL SSYMFSHVER GKTFRLTLCF GVSRLRPRSA  60
   61 IVSAQQEQPP SRLKGLCEVV WIVEADLAAN EHLYVTGDPS TLGSWEPDCA ISMYPTENDN 120
  121 EWEAKVKIAS GVNFRYNYLL KAGYGSSSDV IWRPGPQFSL SVPSSVNQDR KIIIRDSWMS 180
  181 MSISSKSQES YGWGSWIDDA YLFPNCVTPA QSEDECTSAD SAIEVPRTHL NDKQVGAESF 240
  241 LCDELAAFSS ENSNLSALFS DNYQPIEEPW LIQESITLQH ERNMQTDSEQ DVESCDDNEN 300
  301 NLNTDEQNHQ LTETLLPDGG FFQSESIATT ILINSSICTV QRIAVLEGGK LVELLLEPVK 360
  361 TNVQCDSVYL GVITKFVPHM GGAFVNIGSA RHSFMDIKSN REPFIFPPFC DGSKKQAADG 420
  421 SPILSMNDIP APHEIEHASY DFEASSLLDI DSNDPGESFH DDDDEHENDE YHVSDHLAGL 480
  481 VNGTVVNHGA VEVGSENGHI PMERGHSADS LDSNASVAKA SKVMSSKDNK WIQVRKGTKI 540
  541 IVQVVKEGLG TKGPTLTAYP KLRSRFWVLL TRCKRIGVSK KISGVERTRL KVIAKTLQPQ 600
  601 GFGLTVRTVA AGHSLEELQK DLDGLLLTWK NITDEAKSAA LAADEGVEGA IPALLHRAMG 660
  661 QTLSVVQDYF NDKVEKMVVD SPRTYHEVTH YLQDMAPDLC NRVELHDKGI PLFDLYEIEE 720
  721 EIEGILSKRV PLSNGGSLVI EQTEALVSID VNGGHGMFGQ GNSQEKAILE VNLAAARQIA 780
  781 REIRLRDIGG IIVVDFIDMA DESNKRLVYE EVKKAVERDR SLVKVSELSR HGLMEITRKR 840
  841 VRPSVTFMIS EPCSCCHATG RVEALETTFS KIEQEICRQL AKMEKRGDLE NPKSWPRFIL 900
  901 RVDSHMSSFL TTGKRTRLAI LSSSLKVWIL LKVARHFTRG TFEVKPFMDE KTVNERQHQV 960
  961 AISLLKKADA IADSSGKKKL TLIPIKKEKT SGKQRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] PSI-BLAST 44.0 CYCLODEXTRIN GLUCANOTRANSFERASE (E.C.2.4.1.19) (CGTASE)
    2 View Details [181..450] PSI-BLAST 40.69897 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    3 View Details [451..996] PSI-BLAST 170.0 Catalytic domain of E. coli RNase E

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.722981317967914 bayes_pls_golite062009
  • protein binding
    		•  0.0879479556765589 bayes_pls_golite062009
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  1.68001901218686 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.25040026044036 bayes_pls_golite062009
  • catalytic activity
    		•  0.471337605075652 bayes_pls_golite062009
  • RNA binding
    		•  0.39047349004516 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.10784642594092 bayes_pls_golite062009
  • binding
    		•  0.0434890829293879 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.58

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle