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Protein Overview: gi|30678104

General Information:
Name(s) found: gi|30678104 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|30678104|ref|NP_850988.1| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 871 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMNGKLKSR YNYLLKAGYG SSSDVIWRPG PQFSLSVPSS VNQDRKIIIR DSWMSMSISS  60
   61 KSQESYGWGS WIDDAYLFPN CVTPAQSEDE CTSADSAIEV PRTHLNDKQV GAESFLCDEL 120
  121 AAFSSENSNL SALFSDNYQP IEEPWLIQES ITLQHERNMQ TDSEQDVESC DDNENNLNTD 180
  181 EQNHQLTETL LPDGGFFQSE SIATTILINS SICTVQRIAV LEGGKLVELL LEPVKTNVQC 240
  241 DSVYLGVITK FVPHMGGAFV NIGSARHSFM DIKSNREPFI FPPFCDGSKK QAADGSPILS 300
  301 MNDIPAPHEI EHASYDFEAS SLLDIDSNDP GESFHDDDDE HENDEYHVSD HLAGLVNGTV 360
  361 VNHGAVEVGS ENGHIPMERG HSADSLDSNA SVAKASKVMS SKDNKWIQVR KGTKIIVQVV 420
  421 KEGLGTKGPT LTAYPKLRSR FWVLLTRCKR IGVSKKISGV ERTRLKVIAK TLQPQGFGLT 480
  481 VRTVAAGHSL EELQKDLDGL LLTWKNITDE AKSAALAADE GVEGAIPALL HRAMGQTLSV 540
  541 VQDYFNDKVE KMVVDSPRTY HEVTHYLQDM APDLCNRVEL HDKGIPLFDL YEIEEEIEGI 600
  601 LSKRVPLSNG GSLVIEQTEA LVSIDVNGGH GMFGQGNSQE KAILEVNLAA ARQIAREIRL 660
  661 RDIGGIIVVD FIDMADESNK RLVYEEVKKA VERDRSLVKV SELSRHGLME ITRKRVRPSV 720
  721 TFMISEPCSC CHATGRVEAL ETTFSKIEQE ICRQLAKMEK RGDLENPKSW PRFILRVDSH 780
  781 MSSFLTTGKR TRLAILSSSL KVWILLKVAR HFTRGTFEVK PFMDEKTVNE RQHQVAISLL 840
  841 KKADAIADSS GKKKLTLIPI KKEKTSGKQR R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] MSA 26.062997 View MSA. No confident structure predictions are available.
    2 View Details [192..302] MSA 2.075987 View MSA. No confident structure predictions are available.
    3 View Details [303..871] PSI-BLAST 163.0 Catalytic domain of E. coli RNase E


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle